Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04309 ATGGGAAAGAAGAAGCCATCAATACGCGACGACGAGAATCCACCGCAACAAGGCGGCGGTGGTAAATCAAAGAAGAAGGCTCCGATTATTGATGACGATGAATATTCTATCGGAACTGAGCTTTCGGAGGAAACAGCGGCTCCGGTGGTAGTGGATGAGAAACCTGGGAAAAAGAAAGGTAAGAAAGGTAATACTAAATCTTCACAAGTTAAAGATAatggtgatgattttgatgatgttgatgatgatgtgcCTGAAATTGTTTTTGCTGGGAAGAAAAAGGGGAAATCGAAGAAAAGTGGTGGGGGGAGTGTGTTTAGTGCTGCCGCTGGATTTGGTTTGCTTGGGGATGAGGAGGACGGTGATAAggatgatgaagatgaggagAAATCTGAGTTAACCGTTGAAGGAGGTGGCGATGAGGAAGATGAACCAATTGTTTTTActgggaagaagaagaagtccTCGAAGGGTTCGAAGAAAGGAGGAGGTAGTTTGTTTAGTGCATTAGATGAGATTGATGATGGAGATGAGGAGAGTAAGGATGAAAAGgtggaggatgatgatgatgaagatataGAGCCAATCACTTTCTcggggaagaagaagaaatcgtCTAAGTCTAAGAAGGCGGGTAGTTTATTGAGTACAGCTATTCCGGATGAGGATAGTGTTTCTGTATCGGAGTCTGCTAAAGGTGGCGATGAAAATGATGAGGATGATATTTCTCTTGCCTTTACTGGTAAAAAGAAGTCTTCTAAAAAGAAGAGTGGTGGTGCTGCTGCGAAAGTGAGTGGTGAAAGTATCGATGCTGTTGAGGCAGAGAAGCCTAGTGCTGGAGAAGTGAGTAATGCTAATGTTGACAATGGTAATATAAGTAAGAGTGAAGAGGTCGTTGGAACCtctaaaaataagaagaagaataagaagaagagTGGGAGGACAAAAGAAGAGGAGGATGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTACGGCAAAACCTGCTGCTCCTCCGCTGCAGGATGATAAAGTTCAGCCTGCTCTTGAAGTTGGTTCTGCTGCTGGTGCTTCGGTGGAAAAGGATGGAGAAGAGGAGACTGTAGAATCAGCTGCtgcaaaaaagaagaaaaagaagaaggagaaggaaaAGGAGAAGAAGGCAGCAGCAGCAGCCGGAAGTGCACCGGTTGTTGAAACTGTAGAAGAGAAAGCTGAGATAAGTGAACCAAAGAAAAATGATTCGAAGACCAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAACTATTGGCTAGAAGACAAGAGGctgaagagagaaagaaaaaagaagaggaagagaagCTAAGGAAAGAAGAAGAGGCGCGACAAAGGCAAGAGGAACTTGAGAGAAAGGCAGAAGAGGCTAAACGtataaagaaggaaaaagaaaagctaaaaatagagcaaaagaagagagaaggtaAATTCTATACTGCTAAGCAGAAAGAAGAACAAAAGCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACCGGGGGTGTGACTGTTCCTTCTGGGGACACTGGTGCACCAGCCAAAAAACCCATTTATCAGAAAAAGAAGGGGAAACCAACTAATCGAAATCATAATGGTGCCGCTGATGTCAAGACAGATGAAAGTGTTGAAAAAAAGGAAACTACCGCTGATTTAGATTCGAAGGAACCGGAAAAGGTTGAAGATGTGGAGTCGGTGAGAATGGAGGACAAAGTTGAACTTCCTGAAGCTGTAGAAGAGGATGCcgtggaagaagatgatgatgaggttGAATGGGATGCAAAAAGCTTGGATGATCTCAACCTGAATGATAAGGGTGCATTTGCTGATGAAGAAGTTGACTCCGAGCCTGAACAGATTGTCAAAAAAGAGATTAAAAATGTACCTGCTAAAAATGCTGATGCTACAAATAAAACTGTTTTGAAGCCTGTGGCTGAAGAAACTGAAGATAGAAAACAGGCCAGAGCTGTGGTTGAggacaaaaagaaaaagcacaATCCACAACAGTCTGCTGTGCCTCCTAAGCCGAGTGAGGGGAACCTCCGATCGCCAATTTGCTGCATCATGGGTCATGTGGACACTGGAAAAACCAAGCTTCTGGACTGTATTCGAGGTACAAATGTTCAAGAAGGCGAGGCCGGTGGTATTACCCAACAGATTGGTGCAACATACTTTCCTGCTGATAACATACGTGAAAGAACTAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGCCACGAATCGTTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAGACTATAGAATCACTCAATCTATTAAAAATGAGGAACACTGAATTCATTATTGCATTAAATAAGGTTGACAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCTAAGGATGTTCTAAATGAGTTTAATATGCGGGTCACTCAGATTGTTACTCAGTTCAAGGAACAAGGGCTAAATACTGAAttgtattataaaaacaaagaaatgggAGAAACATTCAGCATTGTTCCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAAACTATGACTGAAAAACTTACGTACAGTGAAGAAGTGCAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAACGGTGTTCTTCATGAAGGAGATCAGATAGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCAtcacaaagaaatcaaagctGCAATGGGCATCAAAATCACAGCCCAGGGTCTTGAACATGCTATTGCTGGCGCAAGTTTATATGTGGTGAAGCCTGATGATGATTTGGAATATATTAAAAAGGCGGCCGTGGAAGACGTGGAGTCAGTTTTGAGCAGGATTGACAGGAGCGGGGAGGGCGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAACATTCCTGTTAGTGCTATAAACATAGGCCCTGTACATAAGAAGGATGTGATGAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTTTTCTACTATATTGGCATTTGATGTCAAAGTCACCCCTGAAGCTAGGGAACTTGCAGATGAATTGGGTGTGAAAATTTTTATTGCCGATatcatttatcatttatttgatCAATTTAAGGCTTACATGGACAACATTAAGGAGGAGAAAAAGAAGGAATCTGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAGATCTTACCAAATTGCGTCTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGACATCCTTGAAGGCATTTTGAAgATTGGAACTCCAATCTGTATTCCTTCCCAAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCGGTTGATTATGCGAAGAAAGGGCAGAAAGTAGCTATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTTGGGAGGCACTTTgagattgatgatgagcttGTAAGCCATATTTCGCGAAGATCTATTGATATTCTCAAAACTAATTATCGGGATGACCTGTCTATGGAGGAATGGAAGCTGGTGGTGAAATTGAAGAGTCTTTTCAGGATACAATGA 3873 0.3839 MGKKKPSIRDDENPPQQGGGGKSKKKAPIIDDDEYSIGTELSEETAAPVVVDEKPGKKKGKKGNTKSSQVKDNGDDFDDVDDDVPEIVFAGKKKGKSKKSGGGSVFSAAAGFGLLGDEEDGDKDDEDEEKSELTVEGGGDEEDEPIVFTGKKKKSSKGSKKGGGSLFSALDEIDDGDEESKDEKVEDDDDEDIEPITFSGKKKKSSKSKKAGSLLSTAIPDEDSVSVSESAKGGDENDEDDISLAFTGKKKSSKKKSGGAAAKVSGESIDAVEAEKPSAGEVSNANVDNGNISKSEEVVGTSKNKKKNKKKSGRTKEEEDDLDKILAELGEAPPTAKPAAPPLQDDKVQPALEVGSAAGASVEKDGEEETVESAAAKKKKKKKEKEKEKKAAAAAGSAPVVETVEEKAEISEPKKNDSKTNKKVPKHVREMQELLARRQEAEERKKKEEEEKLRKEEEARQRQEELERKAEEAKRIKKEKEKLKIEQKKREGKFYTAKQKEEQKRLEAMRRQILNSTGGVTVPSGDTGAPAKKPIYQKKKGKPTNRNHNGAADVKTDESVEKKETTADLDSKEPEKVEDVESVRMEDKVELPEAVEEDAVEEDDDEVEWDAKSLDDLNLNDKGAFADEEVDSEPEQIVKKEIKNVPAKNADATNKTVLKPVAEETEDRKQARAVVEDKKKKHNPQQSAVPPKPSEGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPADNIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRLYGWKTCRNAPIRKAMLQQSKDVLNEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMTEKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAAVEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSAINIGPVHKKDVMKASVMLEKKREFSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYMDNIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQEFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKTNYRDDLSMEEWKLVVKLKSLFRIQ 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04309 1290 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1024 1152 IPR036925 -
Tsu01g04309 1290 CDD aeIF5B_II 922 1032 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 228 248 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 515 635 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 660 684 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 171 194 - -
Tsu01g04309 1290 Gene3D Translation factors 1153 1290 - -
Tsu01g04309 1290 Coils Coil 364 395 - -
Tsu01g04309 1290 Pfam Elongation factor Tu GTP binding domain 702 910 IPR000795 GO:0003924|GO:0005525
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 612 635 - -
Tsu01g04309 1290 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1290 IPR015760 -
Tsu01g04309 1290 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1290 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 50 74 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 1 475 - -
Tsu01g04309 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 989 IPR027417 -
Tsu01g04309 1290 TIGRFAM small_GTP: small GTP-binding protein domain 703 827 IPR005225 GO:0005525
Tsu01g04309 1290 Pfam Elongation factor Tu domain 2 937 1015 IPR004161 GO:0005525
Tsu01g04309 1290 Gene3D - 693 920 IPR027417 -
Tsu01g04309 1290 Gene3D - 1040 1146 IPR036925 -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 592 611 - -
Tsu01g04309 1290 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 698 914 IPR000795 GO:0003924|GO:0005525
Tsu01g04309 1290 Coils Coil 661 681 - -
Tsu01g04309 1290 CDD IF2_eIF5B 701 911 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 551 591 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 118 143 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 405 475 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 312 327 - -
Tsu01g04309 1290 PRINTS GTP-binding elongation factor signature 702 715 IPR000795 GO:0003924|GO:0005525
Tsu01g04309 1290 PRINTS GTP-binding elongation factor signature 766 776 IPR000795 GO:0003924|GO:0005525
Tsu01g04309 1290 PRINTS GTP-binding elongation factor signature 782 793 IPR000795 GO:0003924|GO:0005525
Tsu01g04309 1290 PRINTS GTP-binding elongation factor signature 818 827 IPR000795 GO:0003924|GO:0005525
Tsu01g04309 1290 SUPERFAMILY Translation proteins 1157 1289 IPR009000 -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 282 298 - -
Tsu01g04309 1290 Gene3D Translation factors 921 1039 - -
Tsu01g04309 1290 Pfam Translation-initiation factor 2 1028 1139 IPR023115 -
Tsu01g04309 1290 CDD IF2_aeIF5B_IV 1161 1256 - -
Tsu01g04309 1290 Coils Coil 424 493 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 362 379 - -
Tsu01g04309 1290 MobiDBLite consensus disorder prediction 651 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04309 Tsu-Chr1 50890161 50899297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04309 1 1290 Eukaryotic Initiation Factors Gene Family AT1G76810 60.879 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04309 K03243 - gmx:100814640 1507.66