Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04308 ATGGAGAACAATAAACCAACAGACGTCAAGAATCCACCGACGATGAAGTCTCCGGTCACCGATGACGATGGAGATGATAATGGTGTGGATGTAGTTTTTCCAGCGCCACAGCAAGATGATAAAGTTCCTGAAGTAGGTTCAAGGGAAAAAGAGGGAGAAGATGAGACTGTTGAATCAGCTGCGGCAAAAAAGAGgagaaagaagaaggaaaaggaaaaggaaaaggagAAGAAGGCGGCAGCAGCAACGGCCGGAAGTGCAGCGGTTATTGAAACTGTAGAAGAAACGGCTGAGACAAGTGAACCGAAGAAAATTGATTCGAAGTCGAACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAATTACTGGCTCGAAGAAAAGAGGCGgaggagagaaagaaaagagaagaggaagagaaactaaggaaagaagaagaggagagaCAAAGGCTAGAGGAACTTGAGAGAATTGCAGAAGAGGCTAAACGtataaagaaggaaaaagaaaagcaaaaactGGAGACAAAGAGGATAGAAGGTAAGTTGTTAACTGATAAGATGAAACGAGAAGCTCGACGTTTGGAGGCAATGAAGAGGCAGATTATCAATAGTGGGGGTGTGAATCTTCCTGTTAAGGAGGACATTGGTGCACCGGCTAAGAAACCTGTTTATCAGACAAGGACGAGGAGATCAACTAATCGAAATCATAATGGTGAAGTTTCTGTCAAGACAGATGAAAGTGGTGAGGCAAAGGAAACCATAACTGATTTAGATTCAGAGGAACCGTCGGTGCAGATGGAGGACAATGTTGAACTTCCTGAAGCTGTTGAAGAGGATGAATGGGATGAAAGAAGCGGGGATGATGTCAATCTGAATGATAGGGGTGCATTTGCTGACGATGAAGAAACTGTTTTGAAGCCTGcggttgaagaaactgaagatAGAAAACAGGCCAAAGTTGTGGTTgaagacaaaaagaaaaatcatgaTCCACAACAGTCTTCTGTGCCTTCTAGTCCGAGTGATGGGAACCTCCGGTCGCCAATTTGCTGCATTATGGGTCATGTGGACACCGGAAAAACCAAGCTTCTGGATTGTATTCGAGGTACCAATGTTCAAGGAGGCGAGGCTGGCGGTATCACCCAGCAGATTGGCGCAACATACTTTCCTGCTAAGAACATACGCGAAAGAACTAAGGAACTGAAAGCTGATGCAACGCTGAAAGTTCCTGGTCTACTGGTTATTGATACCCCAGGCCACGAATCGTTCAATAACTTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTAGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTATAGAGTCACTCAATCTATTAAAAATGAGGAACACAGAATTCATTATTGCATTGAATAAGGTTGACAGGATTTTTGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGACGAAGCAATCTAAGGATgttaaaaatgagtttaataTGAGGGTCACTCAGaTCGTTACTCAGTTCAAGGAACAAGGGCTAAATACAGAAttgtattataaaaacaaagaaatgggAGAAACATTCAGCATTGTGCCTACAAGTGCAATAACCTGTGAAGGAATTCCAGATATGTTATTACTATTGGTTCAGTGGACTCAAAGGACCATGATTGAGAAACTTACATTCACTGAAGAAGTTCAGTGTACAGTTTTGGAAGTCAAGGTTATCGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGATCAAATAGTTGTATCTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCAtcacaaagaaatcaaagctGCAATGGGCATCAAGATCACGGCCCAGGGACTTGAACATGCTATTGCCGGCGCTAGTTTATACGTGGTAAAGCCTGATGATGATTTGGAGTATATTAAAAAAGCGGCCTTAGAAGACGTGGAGTTAGTCTTGAGCAGGATTGACAGGAGCGGTGAGGGCGTTTGTGTCCAGGCATCTACGCTTGGCTCATTGGAAGCATTACTAGAGTTTTTGAAAACTCCGGAAGTCAACATTCCTGTTAATGCTATAAACATTGGTCCTGTACATAAGAAGGATGTGATTAAGGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCTACTATATTAGCGTTTGATGTCAAAGTCACTCCTGAAGCTAGGGAACTTGCAGATAAATTGGGCGTGAAAATTTTTAACGCCGATatcatttatcatttatttgatCAATTTAAGGCTTACATGGACAACATTAAGgaggagaaaaagaaagaatctGCTGACGAGGTAGTCTTCCCATGCGTTCTAAAGATCATACCAAATTGTATCTTCAACAAGAAGGATCCGATTATTTTAGGAGTTAATATCCTTGAAGGCACGTTAAAGATTGGGACTCCAATTTGTATTCCTTCGCAAGATTTTATCGATATTGGCCGCATTGCCTCCATTGAAATTAACAATAAACCGGTTAATCATGCGATGAAAGGGCAGGAAGTAGCCATTAAGATTGTTGGCTGCAATTCTGAGGAAAAGCAGAAAGCATTTGGGAGGCATTTTGATATCGATGATGAACTTGTAAGCCGTATTTCACGGAGATCTATTGATGTTCTCAAAACTAATCATCGGGACGATCTGTCTATGGAGGTACTGAAGCTggtggcaacattgaagagacTTTTCAAGATACAATGA 2817 0.3813 MENNKPTDVKNPPTMKSPVTDDDGDDNGVDVVFPAPQQDDKVPEVGSREKEGEDETVESAAAKKRRKKKEKEKEKEKKAAAATAGSAAVIETVEETAETSEPKKIDSKSNKKVPKHVREMQELLARRKEAEERKKREEEEKLRKEEEERQRLEELERIAEEAKRIKKEKEKQKLETKRIEGKLLTDKMKREARRLEAMKRQIINSGGVNLPVKEDIGAPAKKPVYQTRTRRSTNRNHNGEVSVKTDESGEAKETITDLDSEEPSVQMEDNVELPEAVEEDEWDERSGDDVNLNDRGAFADDEETVLKPAVEETEDRKQAKVVVEDKKKNHDPQQSSVPSSPSDGNLRSPICCIMGHVDTGKTKLLDCIRGTNVQGGEAGGITQQIGATYFPAKNIRERTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIIALNKVDRIFGWKTCRNAPIRKAMTKQSKDVKNEFNMRVTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAITCEGIPDMLLLLVQWTQRTMIEKLTFTEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVSGMQGPIVTTIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEYIKKAALEDVELVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVNAINIGPVHKKDVIKASVMLEKKREYSTILAFDVKVTPEARELADKLGVKIFNADIIYHLFDQFKAYMDNIKEEKKKESADEVVFPCVLKIIPNCIFNKKDPIILGVNILEGTLKIGTPICIPSQDFIDIGRIASIEINNKPVNHAMKGQEVAIKIVGCNSEEKQKAFGRHFDIDDELVSRISRRSIDVLKTNHRDDLSMEVLKLVATLKRLFKIQ 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04308 938 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 55 938 IPR015760 -
Tsu01g04308 938 SUPERFAMILY Translation proteins 805 937 IPR009000 -
Tsu01g04308 938 MobiDBLite consensus disorder prediction 233 259 - -
Tsu01g04308 938 CDD IF2_aeIF5B_IV 809 904 - -
Tsu01g04308 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 637 IPR027417 -
Tsu01g04308 938 PRINTS GTP-binding elongation factor signature 430 441 IPR000795 GO:0003924|GO:0005525
Tsu01g04308 938 PRINTS GTP-binding elongation factor signature 350 363 IPR000795 GO:0003924|GO:0005525
Tsu01g04308 938 PRINTS GTP-binding elongation factor signature 466 475 IPR000795 GO:0003924|GO:0005525
Tsu01g04308 938 PRINTS GTP-binding elongation factor signature 414 424 IPR000795 GO:0003924|GO:0005525
Tsu01g04308 938 CDD aeIF5B_II 570 676 - -
Tsu01g04308 938 MobiDBLite consensus disorder prediction 1 151 - -
Tsu01g04308 938 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 672 800 IPR036925 -
Tsu01g04308 938 Gene3D Translation factors 569 687 - -
Tsu01g04308 938 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5B-LIKE 55 938 - -
Tsu01g04308 938 Coils Coil 57 81 - -
Tsu01g04308 938 TIGRFAM small_GTP: small GTP-binding protein domain 351 484 IPR005225 GO:0005525
Tsu01g04308 938 Gene3D Translation factors 801 938 - -
Tsu01g04308 938 Coils Coil 113 182 - -
Tsu01g04308 938 Pfam Elongation factor Tu GTP binding domain 350 557 IPR000795 GO:0003924|GO:0005525
Tsu01g04308 938 Pfam Translation-initiation factor 2 679 787 IPR023115 -
Tsu01g04308 938 MobiDBLite consensus disorder prediction 42 65 - -
Tsu01g04308 938 MobiDBLite consensus disorder prediction 209 345 - -
Tsu01g04308 938 MobiDBLite consensus disorder prediction 288 332 - -
Tsu01g04308 938 MobiDBLite consensus disorder prediction 262 287 - -
Tsu01g04308 938 Gene3D - 341 568 IPR027417 -
Tsu01g04308 938 CDD IF2_eIF5B 349 559 - -
Tsu01g04308 938 Pfam Elongation factor Tu domain 2 585 663 IPR004161 GO:0005525
Tsu01g04308 938 MobiDBLite consensus disorder prediction 96 151 - -
Tsu01g04308 938 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 346 562 IPR000795 GO:0003924|GO:0005525
Tsu01g04308 938 Gene3D - 688 794 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04308 Tsu-Chr1 50884282 50887916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04308 113 938 Eukaryotic Initiation Factors Gene Family AT1G76810 66.629 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04308 K03243 - gmx:100814875 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04308 01 50884282 50887916 Tsu01g04308 01 50884282 50887916 ECH