Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04305 atggatatgAATTTGTCACAAGGTGGAATACTTCAAGGTGGTGTTGGTAATTCTTTTAGTGGATTTGATTTACCTGGATCAATTCAGGTTCATCATCAAGCACATCATCCTCATACTATTCACCAACATCAACCTCATCCTCATCCGCATCCGCGTCAAGGGTCTTCGCTACATTCGTCGGTTCATGACGGTTTTCCACTCACAATGGGAACTTTGCAGAATTGTGATCAAACTATTTCAATGACAGATTATAGTAAGGGAGAGAGAAGCAAAAACTCGACGAGTGAGGATGATGAGCCGAGTTTTAACGAGGACGGTTTTGATGGTCATGGTCAACATGAAGGGGGTAGAGGTAAAAAGGGATCATCGTCACCTTGGCAACGTGTGAAGTGGACTGATAAGATGGTGAGGCTTATGATAACAGCTGTTTCTTATATAGGTGAGGATATAACTATTGATGGTGGAGGTGGAAATGGAAGAAAGAGATTTGCGGTTTTACAGAAAAAGGGTAAGTGGAAATCTGTATCGAAAGTCATGGCCGAAAGAGGTTATCATGTTTCACCTCAACAATGTGAGGATAAATTCAATGATCTTAATAAAAGGTATAAGAAGCTTAATGATATGTTAGGGAGAGGGACTTCTTGTCAGGTTGTTGAGAATCCTTCACTTTTGGATGTAATAGATTTTCTTTCTGAGAAAGAAAAGGACGATGTTCGAAAAATATTAAGCTCGAAACACTTGTTTTATGAAGAGATGTGTTCTTTTCATAATGGTAATAGGTTGCATTTGCCGCACGATCCTGCATTGCAATGTTCCATGCAGTTAGCTCTTCGAAATAGGGATGATCATGATAATGATGATATCAGAAGGTCTCATATTGAAGATCACGATGAAGATGAACAAGATGTAGAAATTGATGAGCGTGATGATTTTAAAGATAATTGTGCTTCTCGTGGTGATAGCAAGAGAATATTTGGGCGGTTAGGTGGATCTACgaagaaattgaaacaaaacCAATGCCAAGAAGATGCTAATGCTTTTGGTTATTCTTTAAATAGTCAAGATAATTTCAACAAAGGTTCGTATCCCCGTGAACAATCGGTTCATTCTGATGGTAATAGAGTTATACCAGAAAACATGACAGCAGCATTGTTACAGAAGCATTGGGTTGACTCTCGTCAAGCTCAGTTAGAAGAGCAAAAGCTACAAATTCAGGTTGAGATGTTGGAATTAGAGAAACAAAGATTAAAGTGGCAGAGATTTAGTAAGAAAAAGGACCGAGAGTTGGAGAAGCTGAGTCTAGAAAACGAAagaatgaaacttgaaaatgaaCGCATGGCTTTAGAACTGAAGCGAAAGGAAATGAATATTGGCCTTAACTAG 1383 0.3767 MDMNLSQGGILQGGVGNSFSGFDLPGSIQVHHQAHHPHTIHQHQPHPHPHPRQGSSLHSSVHDGFPLTMGTLQNCDQTISMTDYSKGERSKNSTSEDDEPSFNEDGFDGHGQHEGGRGKKGSSSPWQRVKWTDKMVRLMITAVSYIGEDITIDGGGGNGRKRFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPSLLDVIDFLSEKEKDDVRKILSSKHLFYEEMCSFHNGNRLHLPHDPALQCSMQLALRNRDDHDNDDIRRSHIEDHDEDEQDVEIDERDDFKDNCASRGDSKRIFGRLGGSTKKLKQNQCQEDANAFGYSLNSQDNFNKGSYPREQSVHSDGNRVIPENMTAALLQKHWVDSRQAQLEEQKLQIQVEMLELEKQRLKWQRFSKKKDRELEKLSLENERMKLENERMALELKRKEMNIGLN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04305 460 PANTHER F16F4.11 PROTEIN-RELATED 1 460 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 32 71 - -
Tsu01g04305 460 Gene3D - 131 204 - -
Tsu01g04305 460 PANTHER FACTOR, PUTATIVE-RELATED 1 460 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 83 126 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 282 312 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 53 71 - -
Tsu01g04305 460 Pfam Myb/SANT-like DNA-binding domain 128 254 IPR044822 -
Tsu01g04305 460 Coils Coil 392 419 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 89 117 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 34 48 - -
Tsu01g04305 460 MobiDBLite consensus disorder prediction 282 297 - -
Tsu01g04305 460 Coils Coil 422 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04305 Tsu-Chr1 50863732 50865964 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g04305 Myb_DNA-bind_4 3.3e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04305 - - gmx:100816474 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04305 01 50863732 50865964 Tsu01g04305 01 50863732 50865964 ECH
Tsu06g02723 06 35187581 35188210 Tsu01g04305 01 50863732 50865964 PCT