Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04303 ATGCTAGGAGACTCAGCTGTTATGAGTGGCGGTGGAGATGCAGCAACACCCAACATGACGGCCGAAGCCGCGGTTGCTGGTGGCGGAGTTGGATCAAATTCTGAAAGTGATGTTGAAAGAAGTAGAATTGATGAAGGTGAACGTAGTTTCGGCGGTAACCGGTGGCCGCGACAAGAAACTATGGCCCTTTTAAGGATACGATCGGATATGGACACAACTTTTCGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTACCACAGAAGTGCGAAGAAATGCAAagagaaatttgaaaatgtttatAAATATCACAAGAGAACAAAAGATGGTCGCGGTGGAAAATCAGATGGTAAAACGTATCGATTTTTCGATCAATTAGAAGCCCTTGATCATTTTCATAATCCCCCTTCTAATCATCCTCAACCTCAacctcaaaatcaaacccaaatcCCATCGAGATCAACACAAATTTCTGCACCAACAACCGCACCGCCACAAGTTGTTACAACTGCAATCCCAATTGTGGAACCAACAACAATACCAATGTCATTGCGGCCGGTGGTTAACGCCACTCTTAGTATCCCCAATGTAAGTGTTCCATCAATTCCTGTGCCTCAAAACAATATTGTAACTACTCAATCAGTTATGAATATGAACCAAACAATCCCTTCTAATCCTACAAGTTTCCAACCATCAACAACAAACCCTCCTACCATCAACTCTCTTCCATCTTTCCCTAACATTTCTACAGATCTATTTTCAAATTCCATGGCGAGTTCATACTCTACTTCTTCCGAAGACACAATGGAAGAAGGATCGAGAAAGAGGAAGCGAAAATGGACGAGCTTTTTTGAAAGACTGATGAAGGAAGTGATTGAGAAACAAGAGGATTTACATAGGAGATTCTTGGAAGCTATTGAGAAACGCGAACATGATCGAATGGCTAGAGAAGAAGCTTGGAGAGAACAAGAGATGCAAAGAATCAATAGAGAGAGGGAAATTCTTGCACAAGAAAGATCTATATCTGCAGCAAAAGATGCTGCAATTATGTCTTTCTTGCAAAAAATTGCAGAACAACAAAATCTTGGACAAACATTGAATAACATCAACATTgcacaaccaccaccaccacaaacacaacaaccaccaccaccacaaaaaCAACGGAGTGCAGCAGCAACACCAACGCCACTACCGCAACCAACACCAATATCAGCGGTACAAGCAGTCCACCCACTACCGCCTTCTCAACTACCACAAGTAACTAAACCGGCCGCACCAATGGCGCTGCAGCAGCAACATCAATCGGTGGCAAATATGGAAATAGTAAAAGTTGATAATAACGGTGAGAATTTCACAGGAGTTAGTCCGTCGAGGTGGCCAAAAGTGGAAGTTCAAGCACTGATAAATCTGAGAACAAGCATGGATAATAAATACCAAGAGAATGTACCAAAAGGCCCTCTATGGGAGGAGATATCTTCAGCAATGAAGAACCTTGGGTACAATAGGAATGCAAAAAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAAGAAAGTAACAAGAAAAGACCCGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTGTATAAGGAGAAAGGCAAAGGCGACAATTCCGGTGGAAGCGGTGGTTCGAGCCAGGTAGTGAAGGCGGATAACATGACAGCGCCGTTAATGGTTAGGCCGGAGCAACAATGGCCACCTCAGCAAGAAGAAGATCGAATGAACCAGAACCgcggagaagaagaagatgatatgGATGAAGATGATAAAGAAGGAGAAGACGAAAACGGAGAAGATATGGATGAAACTGGCAGCGGTGGCGGTGGTGGGAGTAACTTTGAGGTAGTGGCGAGCAAGCCTACGGTGGATGCATCAGCTTGA 1962 0.4093 MLGDSAVMSGGGDAATPNMTAEAAVAGGGVGSNSESDVERSRIDEGERSFGGNRWPRQETMALLRIRSDMDTTFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNPPSNHPQPQPQNQTQIPSRSTQISAPTTAPPQVVTTAIPIVEPTTIPMSLRPVVNATLSIPNVSVPSIPVPQNNIVTTQSVMNMNQTIPSNPTSFQPSTTNPPTINSLPSFPNISTDLFSNSMASSYSTSSEDTMEEGSRKRKRKWTSFFERLMKEVIEKQEDLHRRFLEAIEKREHDRMAREEAWREQEMQRINREREILAQERSISAAKDAAIMSFLQKIAEQQNLGQTLNNINIAQPPPPQTQQPPPPQKQRSAAATPTPLPQPTPISAVQAVHPLPPSQLPQVTKPAAPMALQQQHQSVANMEIVKVDNNGENFTGVSPSRWPKVEVQALINLRTSMDNKYQENVPKGPLWEEISSAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKGKGDNSGGSGGSSQVVKADNMTAPLMVRPEQQWPPQQEEDRMNQNRGEEEDDMDEDDKEGEDENGEDMDETGSGGGGGSNFEVVASKPTVDASA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04303 653 MobiDBLite consensus disorder prediction 37 52 - -
Tsu01g04303 653 CDD GT1 53 118 - -
Tsu01g04303 653 Pfam Myb/SANT-like DNA-binding domain 53 139 IPR044822 -
Tsu01g04303 653 Pfam Myb/SANT-like DNA-binding domain 468 555 IPR044822 -
Tsu01g04303 653 Gene3D - 470 531 - -
Tsu01g04303 653 Gene3D - 55 116 - -
Tsu01g04303 653 PANTHER - 18 646 - -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 140 174 - -
Tsu01g04303 653 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 18 646 - -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 377 416 - -
Tsu01g04303 653 CDD GT1 468 533 - -
Tsu01g04303 653 SMART sant 466 528 IPR001005 -
Tsu01g04303 653 SMART sant 51 113 IPR001005 -
Tsu01g04303 653 ProSiteProfiles Myb-like domain profile. 53 111 IPR001005 -
Tsu01g04303 653 ProSiteProfiles Myb-like domain profile. 468 526 IPR001005 -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 608 628 - -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 558 653 - -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 1 54 - -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 153 174 - -
Tsu01g04303 653 MobiDBLite consensus disorder prediction 385 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04303 Tsu-Chr1 50830127 50833751 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04303 51 597 Trihelix Transcription Factor Family AT1G76890 44.640 7.82e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g04303 Myb_DNA-bind_4 3.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04303 - - gmx:100817001 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04303 01 50830127 50833751 Tsu01g04303 01 50830127 50833751 ECH