Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04302 ATGGATACTTCTACCGGTGAGAATATTGTTCCGTCCGTGGTGGCGCAAAACGGCGCCAACGGTGGTCatgaagagaaagaaagtgAGATTATTGAGGAAGATGATAAGATGAATATGAATGGTGGTGGTGGAAATAGGTGGCCCCGCCAAGAAACATTGGCACTCTTGAAGATAAGATCGGATATGGATGGTGTTTTTCGTGATTCAAGTCTTAAGGGTCCCCTATGGGAAGAAGTTTCAAGAAAACTAGGTGAACTTGGTTATCACCGAAGCTCAAAGAAATGCAAAGAGAAATTTGAGAATGTATACAAATATCACAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATCAATTACAAGCACTTGAAAAACAATTCACACTCTCTTCTTACTCTCCAAAACCACAAACAAATAATCACACACCCTCATTACCAACAACAAAGCCTAATGAAACCATAAATCCAATATCACATGTCACCAATACTACTATTCCATCGACAAACCCTACTGCACTCGTTTTTCCTTCACCACCATCGACCAATACCGCAACCAACcctaacaacaacaacaacaatgttCCATATTCTTTGCCAAACATGAACAACCTATTTTCAAACACAACTACCTCAACTTCGTCTTCCACGGCTTCAGATGAAGACTTGGAAGAGAAGTataggaagaaaagaaaatggaaGGACTATTTCAGGAGATTGACAAGACAAGTGTTGGCAAAACAAGAGGAAATGCAAAAGAAGTTTCTAGAAGCCATAGACAAACGCGAAAAAGAACACATGGCTCAACAAGATGCTTTGAGGATCCAAGAAATAAATCGAATCAATAAAGAACATGAACTTCTTATCCAAGAAAGATCATCAGCAGCTCAAAAAAATGCCGCTGTTATTGCCTTTCTCCAAAAATTGTCGGgacaaccaccaccaccacaaccaccgCCACCACCAACCGTGACATCAATGTCTCCGGTTCCGGTATCACAAGTACAAACACAACAACTAGTGATACCAAACAACAACATTGTTGAAATTAAGAATATGAATAATGGTCATAAAAGTGATTGTGGTGGTGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCACTTATAAGGATAAGAACAAGTCTTGAACcaaaatatcaagaaaatgGACCAAAAGCACCATTGTGGGAAGATATATCAGCTGGAATGAAGAGACTTGGTTACAATAGGAATGCAAAAAGGTGCAAAGAGAAATGGGAGAATATCAACAAATACtacaagaagatgaaagaaagtAACAAGCAAAGGCGTGATGATAGTAAAACATGTCCTTATTTTGATGAACTTGAAGCTCTTtacaaagaaaagaacaaattacaaaaccctTTTGGTTCTAATTCGTTTCATAGTATTAAGTCAAGTGAGATGATGGAGCCATTGATGGTGCAACCAGAACAACAATGGAGACCTCCAACTCAAGATGAAGAAGCTAATGTGGTGAAGAAGAATATTAATGAAGCaacaaaagaagatgaagatgatggagatgttgaagatgaagatgaaaataTGGATGAATATGAAGATGGAGATAgcatggaagaagatgaaggaggTGTTAGTAGCCGTTATGAAGTTGTCACAACAAATAAACTTACTTCAATGGACACAGTTGAATGA 1710 0.3345 MDTSTGENIVPSVVAQNGANGGHEEKESEIIEEDDKMNMNGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALEKQFTLSSYSPKPQTNNHTPSLPTTKPNETINPISHVTNTTIPSTNPTALVFPSPPSTNTATNPNNNNNNVPYSLPNMNNLFSNTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKKFLEAIDKREKEHMAQQDALRIQEINRINKEHELLIQERSSAAQKNAAVIAFLQKLSGQPPPPQPPPPPTVTSMSPVPVSQVQTQQLVIPNNNIVEIKNMNNGHKSDCGGVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKRLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFDELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQDEEANVVKKNINEATKEDEDDGDVEDEDENMDEYEDGDSMEEDEGGVSSRYEVVTTNKLTSMDTVE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04302 569 MobiDBLite consensus disorder prediction 316 336 - -
Tsu01g04302 569 Gene3D - 47 108 - -
Tsu01g04302 569 Gene3D - 377 438 - -
Tsu01g04302 569 SMART sant 373 435 IPR001005 -
Tsu01g04302 569 SMART sant 43 105 IPR001005 -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 1 15 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 1 47 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 212 232 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 520 545 - -
Tsu01g04302 569 CDD GT1 45 110 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 495 569 - -
Tsu01g04302 569 PANTHER - 17 562 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 318 334 - -
Tsu01g04302 569 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Tsu01g04302 569 Pfam Myb/SANT-like DNA-binding domain 375 462 IPR044822 -
Tsu01g04302 569 ProSiteProfiles Myb-like domain profile. 375 433 IPR001005 -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 505 519 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 553 569 - -
Tsu01g04302 569 CDD GT1 375 440 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 22 36 - -
Tsu01g04302 569 MobiDBLite consensus disorder prediction 138 199 - -
Tsu01g04302 569 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 17 562 - -
Tsu01g04302 569 ProSiteProfiles Myb-like domain profile. 45 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04302 Tsu-Chr1 50814252 50817461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04302 41 497 Trihelix Transcription Factor Family AT1G76890 49.798 2.97e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g04302 Myb_DNA-bind_4 3.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04302 - - gsj:114370603 629.017