Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04301 ATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAGCTTAGGTCTAATTTTCTCGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCACCTGGACGCAGCCGTAGATTCTACTCAAAGAAAGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATCGCCCAGGTCACCTATGAGTTGAATGTTCTCGGTACTAGAGGCCCACGAAGGATGAATTGCACTATGTACTCGGTCCCTGCATCTTCCCTTGAGCCAGGTGGCATTGTCCCGGGCCAGCCAGAGCTCATTCAGCGCTCACTTGAAGATTCTTTCCGTAGTTTATCCTTCGCAAGATCAATCGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGACATAATGGGAGCCAGCAATGAAGACGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTTAACTTTAGAGGAAGAGTGACTGTCGCGTCCGTCAAGAATTTTCAGCTGATTGCTGCAACACAACCTGCACCTGGTGCTCCTCATGCAACAGCAGGACCTACGCCGTCGCAGCCGGGACAGTCCGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGAAAGGATATGTTTACGATGGACTATCGATACCCTCTCTCGGCATTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 777 0.4723 MDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSVPASSLEPGGIVPGQPELIQRSLEDSFRSLSFARSIDNSTEFSSCRFSDIMGASNEDEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAPGAPHATAGPTPSQPGQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04301 258 PANTHER TUBBY-RELATED 1 258 - -
Tsu01g04301 258 SUPERFAMILY Tubby C-terminal domain-like 2 258 IPR025659 -
Tsu01g04301 258 ProSitePatterns Tub family signature 2. 243 258 IPR018066 -
Tsu01g04301 258 ProSitePatterns Tub family signature 1. 174 187 IPR018066 -
Tsu01g04301 258 Pfam Tub family 1 253 IPR000007 -
Tsu01g04301 258 MobiDBLite consensus disorder prediction 194 215 - -
Tsu01g04301 258 Gene3D Tubby Protein; Chain A 1 252 IPR025659 -
Tsu01g04301 258 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 258 - -
Tsu01g04301 258 PRINTS Tubby superfamily signature 156 173 IPR000007 -
Tsu01g04301 258 PRINTS Tubby superfamily signature 13 37 IPR000007 -
Tsu01g04301 258 PRINTS Tubby superfamily signature 215 234 IPR000007 -
Tsu01g04301 258 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Tsu01g04301 258 PRINTS Tubby superfamily signature 236 258 IPR000007 -
Tsu01g04301 258 PRINTS Tubby superfamily signature 62 89 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04301 Tsu-Chr1 50789061 50792831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04301 1 258 TUB Transcription Factor Family AT1G43640 68.302 5.77e-128 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu01g04301 Tub 9.9e-92 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04301 K19600 - rcu:8283226 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04301 01 50789061 50792831 Tsu01g04301 01 50789061 50792831 ECH
Tsu06g02731 06 35340877 35344727 Tsu01g04301 01 50789061 50792831 PCT