Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04291 ATGAATTGCGTCAGAGCCTCTGGAAAAAGCAGCACTGTGTCTGCTGATATGAGAGATTTTAGGGGTTTTAGTCCACTTCACTTGCGCAGCGGCAACAGCAGCCTCAGaaGGAAGAAAAAGATGTCTCACaggaagttcgagcatccaagACATGGTTCATTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCAACCAAGCCACCCAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGTATGACCCACATTGTCAGAGAAGTCGAGAAACCAGGATCCAAGCTTCACAAGAAGGAGACCTGTGAGCCAGTCACAATTATTGAGACTCCTCCCATGGTTATTGTCGGTGTTGTCGGTTATGTGAAGACTCCCCGTGGTCTTCGTACATTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGAAAGAAAAACATCCAGACTCAGCTTGAGAAACTGAAGAAGTATGCAACTGTCATCCGTGTATTGGCTCACACTCAGATCAGGAAAATGAAGGGATTGAAGCAGAAGAAGGCCCATATCATGGAGATTCAGGTTAATGGTGGCACTATTGCCCAGAAGGTGGACTTTGcatacaatttttttgagaaacaGGTTCCTATTGATGCTGTCTTCCAGAAGGATGAAATGATTGACATCATTGGAGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACTCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCCTGTATTGGTGCATGGCATCCTGCTAGAGTTTCTTTCACAGTTGCTAGGGCTGGTCAGAACGGATACCATCACAGAACTGagttgaacaagaagatttACAAGCTCGGCAAAACTGGAGAAGAGACCCATGATGCCCAGACTGAGTTCGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCCCACTATGGTATTGTGAAGGAGGATTATCTGATGATCAAGGGGGGCTGTGTTGGTCCCAAGAAGAGGGTTGTTACATTGCGTCAGTCCCTTCTCAAGCAGACTTCCCGTCTTGCTTTGGAAGATATCAAACTCAAGTTTATCGATACCTCTTCAAAGTTCGGCCATGGTCGTTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAGGCTTAA 1290 0.445 MNCVRASGKSSTVSADMRDFRGFSPLHLRSGNSSLRRKKKMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04291 429 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 41 429 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu01g04291 429 MobiDBLite consensus disorder prediction 32 47 - -
Tsu01g04291 429 Gene3D Ribosomal protein L3, domain 3 41 314 IPR044892 -
Tsu01g04291 429 Gene3D Translation factors 84 425 - -
Tsu01g04291 429 Pfam Ribosomal protein L3 41 410 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu01g04291 429 MobiDBLite consensus disorder prediction 30 54 - -
Tsu01g04291 429 Gene3D - 123 247 - -
Tsu01g04291 429 ProSitePatterns Ribosomal protein L3 signature. 252 275 IPR019926 -
Tsu01g04291 429 SUPERFAMILY Translation proteins 44 410 IPR009000 -
Tsu01g04291 429 PANTHER 60S RIBOSOMAL PROTEIN L3-1 41 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04291 Tsu-Chr1 50684315 50689965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04291 41 427 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.339 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04291 K02925 K10999 gmx:100806786 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04291 01 50684315 50689965 Tsu01g04291 01 50684315 50689965 ECH