Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04291 ATGAATTGCGTCAGAGCCTCTGGAAAAAGCAGCACTGTGTCTGCTGATATGAGAGATTTTAGGGGTTTTAGTCCACTTCACTTGCGCAGCGGCAACAGCAGCCTCAGaaGGAAGAAAAAGATGTCTCACaggaagttcgagcatccaagACATGGTTCATTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCAACCAAGCCACCCAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGTATGACCCACATTGTCAGAGAAGTCGAGAAACCAGGATCCAAGCTTCACAAGAAGGAGACCTGTGAGCCAGTCACAATTATTGAGACTCCTCCCATGGTTATTGTCGGTGTTGTCGGTTATGTGAAGACTCCCCGTGGTCTTCGTACATTGAACACTGTATGGACTCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCCAAGCAGTATGAAAGTGATGAAGGAAAGAAAAACATCCAGACTCAGCTTGAGAAACTGAAGAAGTATGCAACTGTCATCCGTGTATTGGCTCACACTCAGATCAGGAAAATGAAGGGATTGAAGCAGAAGAAGGCCCATATCATGGAGATTCAGGTTAATGGTGGCACTATTGCCCAGAAGGTGGACTTTGcatacaatttttttgagaaacaGGTTCCTATTGATGCTGTCTTCCAGAAGGATGAAATGATTGACATCATTGGAGTGACAAAAGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACTCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTTGCCTGTATTGGTGCATGGCATCCTGCTAGAGTTTCTTTCACAGTTGCTAGGGCTGGTCAGAACGGATACCATCACAGAACTGagttgaacaagaagatttACAAGCTCGGCAAAACTGGAGAAGAGACCCATGATGCCCAGACTGAGTTCGATAGGACTGAGAAAGACATCACCCCAATGGGTGGTTTCCCCCACTATGGTATTGTGAAGGAGGATTATCTGATGATCAAGGGGGGCTGTGTTGGTCCCAAGAAGAGGGTTGTTACATTGCGTCAGTCCCTTCTCAAGCAGACTTCCCGTCTTGCTTTGGAAGATATCAAACTCAAGTTTATCGATACCTCTTCAAAGTTCGGCCATGGTCGTTTCCAGACAACACAAGAGAAGCAAAAGTTCTATGGACGCCTCAAGGCTTAA 1290 0.445 MNCVRASGKSSTVSADMRDFRGFSPLHLRSGNSSLRRKKKMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYNFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRVVTLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04291 429 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 41 429 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu01g04291 429 MobiDBLite consensus disorder prediction 32 47 - -
Tsu01g04291 429 Gene3D Ribosomal protein L3, domain 3 41 314 IPR044892 -
Tsu01g04291 429 Gene3D Translation factors 84 425 - -
Tsu01g04291 429 Pfam Ribosomal protein L3 41 410 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu01g04291 429 MobiDBLite consensus disorder prediction 30 54 - -
Tsu01g04291 429 Gene3D - 123 247 - -
Tsu01g04291 429 ProSitePatterns Ribosomal protein L3 signature. 252 275 IPR019926 -
Tsu01g04291 429 SUPERFAMILY Translation proteins 44 410 IPR009000 -
Tsu01g04291 429 PANTHER 60S RIBOSOMAL PROTEIN L3-1 41 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04291 Tsu-Chr1 50684315 50689965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04291 41 427 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.339 0.0 696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04291 01 50684315 50689965 Tsu01g04291 01 50684315 50689965 ECH