Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04288 ATGATGATGTCAGGTTTTGTTCCTGTCTCTTCTAGTTCATCATCATGGATTGGACACAAAAGAGGGCGTGAAGAAGATGATGTAgttggtgttggtgttggtgCTTCTTCTTCTCATCAAGATATGAATACAATTCATAGAAATATTGCTGATTTTAGATTACCTACTTCACATGGAAACTCATCATCATCAGCAACAGAAGCAAATACACCTACAAGTACAAGCAATGCAACACAATCGAATGAAGCCACGACAACAAACGAAGAAGAAACCggagagaaaagaagaagatacAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAAATTCGCGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTCGACACAGCAGAAGCTGCAGCGAGAGCTTACGATGATGCTGCATTAAGATTCAGAGGAAGCAGAGCAAAACTCAACTTCCCTGAAAATGTTACATCAACAAGACCAAATTTTCCAGTAAATACTTCAACGGTATCTAATTCTCCGGCAACCCATTATTCTCCAGCACCACCACAACCACCGCAAATGCAGACACAGCAACCACCGTTTGTTCAATTTCAAGGAACTTCTGATTTGTTAAGAGACTATTATCAATATTCACAGATTTTAAAAGGTTCGGGTGATTTTCAAGGACTTGAGCAATGGTTCTATGAATCACAAATGGCAGCGATACATTCATCCTCTTCGTTTTTATCGTCTTCGCCATCGCTTTCTTtgtcatcttcttcatcttcaactcAATTTTCACCTTCAAGTCAACTATCCTCTGTTTCACTTCCCCTGTTTCCTGGTCAACAAATGGAGTTTTTCCGGCCACCGGAAGATCAATCTCGCAGCGGAGGATATAGTGGTGGCCCAGGTGGGTTCCATTTTCCACCTTCATGGTCAGATTCCGGTGGCTATCATCATCATCCCCCTCCTCCACCACCTTCTTCTAGTTGA 981 0.3976 MMMSGFVPVSSSSSSWIGHKRGREEDDVVGVGVGASSSHQDMNTIHRNIADFRLPTSHGNSSSSATEANTPTSTSNATQSNEATTTNEEETGEKRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDDAALRFRGSRAKLNFPENVTSTRPNFPVNTSTVSNSPATHYSPAPPQPPQMQTQQPPFVQFQGTSDLLRDYYQYSQILKGSGDFQGLEQWFYESQMAAIHSSSSFLSSSPSLSLSSSSSSTQFSPSSQLSSVSLPLFPGQQMEFFRPPEDQSRSGGYSGGPGGFHFPPSWSDSGGYHHHPPPPPPSSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04288 326 MobiDBLite consensus disorder prediction 54 86 - -
Tsu01g04288 326 MobiDBLite consensus disorder prediction 160 193 - -
Tsu01g04288 326 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Tsu01g04288 326 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 10 286 - -
Tsu01g04288 326 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Tsu01g04288 326 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Tsu01g04288 326 MobiDBLite consensus disorder prediction 53 100 - -
Tsu01g04288 326 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g04288 326 MobiDBLite consensus disorder prediction 278 326 - -
Tsu01g04288 326 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Tsu01g04288 326 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Tsu01g04288 326 CDD AP2 105 156 IPR001471 GO:0003700|GO:0006355
Tsu01g04288 326 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Tsu01g04288 326 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Tsu01g04288 326 PANTHER DNA-BINDING DOMAIN 10 286 IPR044808 GO:0003700|GO:0009873
Tsu01g04288 326 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g04288 326 MobiDBLite consensus disorder prediction 160 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04288 Tsu-Chr1 50654190 50656254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04288 57 195 AP2-EREBP Transcription Factor Family AT5G61890 51.079 3.51e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g04288 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04288 - - lja:Lj5g3v1937400.1 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04288 01 50654190 50656254 Tsu01g04288 01 50654190 50656254 ECH
Tsu06g02765 06 35978750 35980745 Tsu01g04288 01 50654190 50656254 PCT