Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04283 ATGGATCCTTATGCTGAAGAGTTACCTCATTACATTCATATCAATCAGAATGAATTTTATATGCGAAGGCATAAGAAACAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGACCCTGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCCCTTGTGGTATCCTTTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGGGGGTGGGGTCTTTTGGCTGATGAGGAAATTAAGGAAGGACAGTTTGTCATTGAATACTGCGGAGAAGTAATATCATGCAAAGAAGCCAAACGCAGATCCCATGCTTATGAAATTCAAGGTCTCAAGGATGCATTCATCATTAGTCTTAATGCGTCTGAATCCATTGATGCAAGTAGAAAAGGAAGCATTGCCAGATTTATCAATCATTCCTGTCAACCAAATTGTGAGACAAGAAAATGGAATGTATTGGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTCTGTGGTGCGCTCAAATGTTCTGGATTCCTTGGAGCAAAGTCTCGTGGCTTTcaaGAGGATACTTATCTATGGGAAGATGATGATGACAgATACTCAATTGAAAAAATTCCTTTATATGACTCTGCCGAGGATGAACTGACGTCAAATGTTGATGGACAAAGTGACCAATCCATGGCTATTGTACTTAAAGCTGAAGAACTACCAGACTCCACTGTTTTAGATATTCAACCACTCAATTCTTCAATTGAGGTCAAGGATTTCAGTATTGGAAAACTGAAAACTGAAATAGTAAGCGAGGACATGAAGTTGTACTCCCAAGATACCGAACAGGACCCTTCACAAAAGAATGCAATGATATCGCGCATTCGAAGTAACACCGCAGGAAGAAACTATCGCATTGGACCTACCAAAAGATCAAAGGCAGGGGGAAGGTTTAAAAATCGCATAAAGAAGAAAATCGATGCAAAATATGCAGCTAGCCTTTTAACATCAAAGGTAGCACAAGAGGAGATCTTAGATTATGAGAAAAGAAAAGACGACGCCACATATGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATCGAAGAACACGAGAGGGACACCCAAGACAGTGTATCTACAACAGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAACTGAAGGCTGAGTTTGATCTTTACTCATCAATTGTTAAAAATGTTGGCTGTAATGCTCAAAGGGCACCCGGCCAAGCAAAACCTACCGAAGCAGACAACGAAAACAAAATTAAGCTGTTGACAAATTGA 1431 0.3983 MDPYAEELPHYIHINQNEFYMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGHCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKEGQFVIEYCGEVISCKEAKRRSHAYEIQGLKDAFIISLNASESIDASRKGSIARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVDGQSDQSMAIVLKAEELPDSTVLDIQPLNSSIEVKDFSIGKLKTEIVSEDMKLYSQDTEQDPSQKNAMISRIRSNTAGRNYRIGPTKRSKAGGRFKNRIKKKIDAKYAASLLTSKVAQEEILDYEKRKDDATYALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVGCNAQRAPGQAKPTEADNENKIKLLTN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04283 476 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Tsu01g04283 476 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Tsu01g04283 476 PANTHER SET DOMAIN PROTEINS 7 414 - -
Tsu01g04283 476 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 7 414 - -
Tsu01g04283 476 Gene3D SET domain 2 235 IPR046341 -
Tsu01g04283 476 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Tsu01g04283 476 SMART set_7 83 206 IPR001214 GO:0005515
Tsu01g04283 476 SUPERFAMILY SET domain 9 220 IPR046341 -
Tsu01g04283 476 Pfam SET domain 94 200 IPR001214 GO:0005515
Tsu01g04283 476 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Tsu01g04283 476 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04283 Tsu-Chr1 50600038 50605794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04283 66 222 C2H2 Transcription Factor Family AT2G23740 35.000 1.58e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g04283 SET 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04283 - - gmx:100804657 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04283 01 50600038 50605794 Tsu01g04283 01 50600038 50605794 ECH