Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04282 ATGGAACACGGCTTCCAAGCCATCTTGGCTGCATTCGCTAGCTTCATCGTCGTCACAGTCATATTCGCCGTCATCATTCTCATCTGTCAGTACCGTAAAGCCGCTCAAATCCGCCGTAACAACCAGATCCGAACTCGACCGCTTCGAAACACAAACCATTACCCAACCAGCTCAAACTCTTTCCCGGCGGTGGACGCTAGCTGGTCATGGGATCCAAATCTCAAAATCTCCATGGAAGAACTCTCCCAAGCCACCAATAACTTCTCACCACTGCGTGTCGTCGGCGACGGCAGCTTCGGTCTAGTCTACAAAGCTCGTCTCTCAACCGGCGTAACCGTCGCCGTCAAAAAACTCTCCCCCGACGCTTTCCAAGGATTTCGCGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTTGACCACCGTAACATCGTCAAAATTCTCGGTTATTGGGCTTCTGGACCTGAACGGTTACTCGTTTACGAGTATAAAGAAAAAGGAAACCTCGATCAATGGCTTCACGAACCTTCTTCTCCAACGCAACCAAACGACGACGTTTTCTCCATTGATATTATTCGTTCTCCTTTGTCTTGGGAAACAAGAGTCAACATAATACGTGGTGTTGCTCATGGGCTTTGTTATTTACATGGGCTTCAGAAGCCCATTATTCATAGAGATATCAAAGCTAGCAATGTCTTATTGGACTCTCATTTTGAGGCCCATATTGCTGATTTTGGGCTTGCACGTAGGATGGATAAAGCGCATTCGCACGTGTCAACGCAGGTCGCAGGAACTATTGGTTACATGCCACCGGAGTATAGAGATGGGTCTAATGTAGCAAACCAGAAAGTCGATGTTTATAGTTTTGGAGTGTTGATGATCGAAACTGTGTCGGGTCATCGGCCCAATTTGGCTGTGAAATTGGAGGGAAATGATATTGGGCTTGTTAATTGGGCTAGGAAGATGAAGGAAAGGAACACTGAGATGGAGATGTTGGATGTAAATATACCAAGAGAAGAAGGGTTGAAGGAGGAGAGTGTTAGGGAGTATGTACATATTGCTTGTATGTGCACTGGTGAGTTACAGAAAGATAGACCTGAAATGCCAGAGGTTGTCAAATTATTGGACTCAATGCCCTTATGA 1143 0.4646 MEHGFQAILAAFASFIVVTVIFAVIILICQYRKAAQIRRNNQIRTRPLRNTNHYPTSSNSFPAVDASWSWDPNLKISMEELSQATNNFSPLRVVGDGSFGLVYKARLSTGVTVAVKKLSPDAFQGFREFAAEMETLSKLDHRNIVKILGYWASGPERLLVYEYKEKGNLDQWLHEPSSPTQPNDDVFSIDIIRSPLSWETRVNIIRGVAHGLCYLHGLQKPIIHRDIKASNVLLDSHFEAHIADFGLARRMDKAHSHVSTQVAGTIGYMPPEYRDGSNVANQKVDVYSFGVLMIETVSGHRPNLAVKLEGNDIGLVNWARKMKERNTEMEMLDVNIPREEGLKEESVREYVHIACMCTGELQKDRPEMPEVVKLLDSMPL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04282 380 ProSiteProfiles Protein kinase domain profile. 88 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04282 380 Pfam Protein tyrosine and serine/threonine kinase 92 374 IPR001245 GO:0004672|GO:0006468
Tsu01g04282 380 Gene3D Transferase(Phosphotransferase) domain 1 165 379 - -
Tsu01g04282 380 PANTHER OS01G0253100 PROTEIN 1 377 IPR045271 GO:0004714|GO:0006468
Tsu01g04282 380 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 377 - -
Tsu01g04282 380 CDD STKc_IRAK 94 378 - -
Tsu01g04282 380 SUPERFAMILY Protein kinase-like (PK-like) 63 375 IPR011009 -
Tsu01g04282 380 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Tsu01g04282 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Tsu01g04282 380 SMART serkin_6 88 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04282 380 Gene3D Phosphorylase Kinase; domain 1 51 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04282 Tsu-Chr1 50598360 50599685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04282 72 375 Receptor kinase-like Gene Family AT5G07280 44.262 3.95e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tsu01g04282 PK_Tyr_Ser-Thr 6.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04282 - - lang:109335579 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04282 01 50598360 50599685 Tsu01g04282 01 50598360 50599685 ECH