Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04279 ATGGGCTGTGTTCAAGCCAAACCATTAGAATCTGAAGCTTCTTCAAACTATAGAGGCTTAAACAGATTCAAAATGGAAAATGGGTATGTTCCAAGTTCTGATTTTGTTGCTCATagaagatccactggtggtcAAACTAAAACAACTCATCTTGAGAACAAGAAGACTAAGGATGTTATTATTGATCGTCATGTTTATCAGAAACAACCCAGAAAGCATAAAGTTGTTGATGGTAAAAGTGGAAAGGGAAAGAGAGATGGTGATTTGAAAGATAGTAAGAAACAGTTGAATAAATGTTTTGAAGATGAGATGGTTGATGGTTGGCCTAAATGGTTAGTTGATAATGTTCCTATTCAAGGTTTGGCTGGCTTGGTTCCCAAGAGTGCTGAATCTTACAAAATGATTGATAAGGTAGGACAAGGAACCTACAGCAATGTATATAAAGCACTAGATCGAGAAACGGGCGATATCGTGGCACTCAAAAAGGTCCGCTTCAATACATCAGAGCCTGAAAGCATTAAATTTATGGCAAGAGAAATTACAATATTGCAGAGATTGGATCATCCCAATGTAGTAAAACTTAAAGGGCTAGCCACTTCAAGAATGCAGTATAGTATATATCTAGTTTTTGATTTCATGCCAACAGATTTGTCGAGAATTATTACTCGACCTGACGAAAGACTAACCGAACCACAGGTCAAGTGCTACATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCATGATAGGGGAATTTTGCATCGAGATATAAAGGGATCAAATCTTTTGATTGATAAAAATGGAATGCTTCAGATTGCCGATTTTGGACTTGCCAATTATTATAGTACAAATCAACAACAGCCTCTCACAAACCGGGTTGTGACGTTATGGTACAGAGCTCCTGAGTTGTTGTTAGGTTCCACAGATTATGGAGTCGGTATTGATCTATGGAGTGCTGGATGTCTCCTTGCAGAAATGTTTAGAGGAATTCCAATTATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGCACACCGTCGCAAGAGTATTGGAAAAAGCTAAAACTTTCTACAACTTTTATACCTCCAAAATCTTATAGACCAAGTCTGGTAGAAACTTTCAAGGATCTGCCTCCATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTGCATTTCGCGGAAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCGTTACAAGCCCATTAGCTTGTGATCTGTCTGGTCTGCCAACAATATACAAAGAAGATGATGAGAACATTCAAGCCAAAGAACAGATCAAGTATATCAACTCCAAAATCAGGCGTTCTCGTACATTTATGGAGCGTCGCAAGAATTTGTCATCTAATAAGCCAATAGAACCTACTTTATCATCTAAAGAAGTCTTGATAAGTAAGGCTGAGGCTGAAACTTATGTTCCAAGTCAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCTAGTGTAAACCAAGCTGGAATTGGGGACCATTCACCCCTCTTTATCTCTCCATTTCTTGGTTCTGATCAAAAGTTTCCCCACAAAATCCATAATAGGCATGCTAATATTGGTGAAAGAAACAACAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAATGTAACCAAGAAAGATGATAGCAGATACAGAACAGACCAGATTTTCAGGTCCACTTCCACTAGAGAATTTAGAAAGTtaaaaacagaagaaaattTACTCTTTGATTAG 1776 0.3739 MGCVQAKPLESEASSNYRGLNRFKMENGYVPSSDFVAHRRSTGGQTKTTHLENKKTKDVIIDRHVYQKQPRKHKVVDGKSGKGKRDGDLKDSKKQLNKCFEDEMVDGWPKWLVDNVPIQGLAGLVPKSAESYKMIDKVGQGTYSNVYKALDRETGDIVALKKVRFNTSEPESIKFMAREITILQRLDHPNVVKLKGLATSRMQYSIYLVFDFMPTDLSRIITRPDERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANYYSTNQQQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFRGIPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPPKSYRPSLVETFKDLPPSSLGLLCTLLALDPAFRGSASKALKNQFFVTSPLACDLSGLPTIYKEDDENIQAKEQIKYINSKIRRSRTFMERRKNLSSNKPIEPTLSSKEVLISKAEAETYVPSQEPGSATSSTSSSVNQAGIGDHSPLFISPFLGSDQKFPHKIHNRHANIGERNNKNLPPLSKSKPNVTKKDDSRYRTDQIFRSTSTREFRKLKTEENLLFD 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04279 591 SUPERFAMILY Protein kinase-like (PK-like) 127 418 IPR011009 -
Tsu01g04279 591 Gene3D Phosphorylase Kinase; domain 1 122 214 - -
Tsu01g04279 591 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Tsu01g04279 591 Gene3D Transferase(Phosphotransferase) domain 1 215 454 - -
Tsu01g04279 591 PANTHER CELL DIVISION PROTEIN KINASE 1 556 - -
Tsu01g04279 591 PANTHER CYCLIN-DEPENDENT KINASE 1 556 - -
Tsu01g04279 591 MobiDBLite consensus disorder prediction 538 565 - -
Tsu01g04279 591 SMART serkin_6 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04279 591 ProSiteProfiles Protein kinase domain profile. 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04279 591 MobiDBLite consensus disorder prediction 491 508 - -
Tsu01g04279 591 MobiDBLite consensus disorder prediction 70 91 - -
Tsu01g04279 591 Pfam Protein kinase domain 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04279 591 MobiDBLite consensus disorder prediction 488 508 - -
Tsu01g04279 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04279 Tsu-Chr1 50576106 50579269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04279 127 449 Core Cell Cycle Gene Families AT5G10270 44.575 8.18e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu01g04279 Pkinase 3.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04279 K08819 - gmx:100776854 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04279 01 50576106 50579269 Tsu01g04279 01 50576106 50579269 ECH