Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04271 ATGATCTCCAAAGCTCCCCAACCAAATTCAATTGATGCATTGAAGTTTAAAATGTCTGTTCAAAAGGATCCTGATAAGTTCTTCATGTCTATCAGTCAAGAAGAGAATAATCCATTTGACTATTTTCGAGCTCTATATGAGGGTTGTATTGCTGGAGGTGTTGCTGGTGTTGCTGTAGAAGCAGCTTTATACCCCATTGATACCATCAAAACTCGACTACAGGTTGCTCGTGGTGGAGTAAATATTGCTTTCAAGGGTTTGTATTCTGGATTGGCTGGAAATCTTGCTGGTGTCTTACCAGCTTCTGCAATTTTTATTGGTGTGTATGAACCAGCAAAGCAGAAATTGCTAGAGATCTTCCCTGAAAATCTAAGCGCTCTGGCTCACATTGCTGCAGGTGCTATTGGAGGAGCCGCTTCTTCTCTTGTTCGTGTTCCAACTGAGGTTGTTAAGCAAAGGATACAGACCGGTCAATTCAAATCAACTGCAGCTGCTGTCCGTCTTATCATTGCTAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTTTAGAATTGTGCATCTACGAACAGCTCCGTATTGGCTATAAACTAGCGgCAAAAAGAGATCTAAATGATCCAGAGAATGCTATGCTTGGGGCTTTTGCTGGTGCCATAACTGGAGCAGTTACAACTCCACTTGATGTAGTGAAAACCAGATTGATGGTTCAGGGAACCCAAAAATATTACAACGGCATTTGTGATTGTGTTAGGACAATAGTTAAAGAAGAAGGAGCTCATGCTCTTTTTAAGGGTATTGGACCAAGAGTTGTATGGATAGGAATAGGTGGTTCAATATTTTTTGGTGTTCTTGAGAAGACAAAGAAAATTCTTGCTCAGAAGCACTCTGAGAAAAATGCATGA 936 0.4049 MISKAPQPNSIDALKFKMSVQKDPDKFFMSISQEENNPFDYFRALYEGCIAGGVAGVAVEAALYPIDTIKTRLQVARGGVNIAFKGLYSGLAGNLAGVLPASAIFIGVYEPAKQKLLEIFPENLSALAHIAAGAIGGAASSLVRVPTEVVKQRIQTGQFKSTAAAVRLIIANEGFKGLYAGYGSFLLRDLPFDALELCIYEQLRIGYKLAAKRDLNDPENAMLGAFAGAITGAVTTPLDVVKTRLMVQGTQKYYNGICDCVRTIVKEEGAHALFKGIGPRVVWIGIGGSIFFGVLEKTKKILAQKHSEKNA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04271 311 Gene3D Mitochondrial carrier domain 46 311 IPR023395 -
Tsu01g04271 311 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 10 309 - -
Tsu01g04271 311 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 10 309 - -
Tsu01g04271 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Tsu01g04271 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Tsu01g04271 311 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Tsu01g04271 311 Pfam Mitochondrial carrier protein 46 78 IPR018108 -
Tsu01g04271 311 Pfam Mitochondrial carrier protein 219 305 IPR018108 -
Tsu01g04271 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 115 IPR018108 -
Tsu01g04271 311 PRINTS Mitochondrial carrier protein signature 181 201 IPR002067 GO:0055085
Tsu01g04271 311 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085
Tsu01g04271 311 PRINTS Mitochondrial carrier protein signature 142 156 IPR002067 GO:0055085
Tsu01g04271 311 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Tsu01g04271 311 PRINTS Mitochondrial carrier protein signature 274 292 IPR002067 GO:0055085
Tsu01g04271 311 SUPERFAMILY Mitochondrial carrier 46 296 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04271 Tsu-Chr1 50506312 50512415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04271 20 311 Chloroplast and Mitochondria Gene Families AT2G30160 30.000 3.63e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04271 K15111 - gmx:100800051 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04271 01 50506312 50512415 Tsu01g04271 01 50506312 50512415 ECH