Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04268 atgacTGAATCGGAGATAGGGACACCGACGGCCGCGTCAGTGCCTGCAACACCGGATACTCCGGGAGGGCCACTATTCTCATCGGTGAGAATTGATTCGCTTGAACGTGAGTCATTTGCAATGGGGAGGTGCAACATGTGTATGCCGGGTGGTAAAAGCAATGGTTGCATCAACATCGCTTCTGGTGTTGGAATTCCTAGTGTCTCTCTCGCTCAGAAGATTGGAGCAGAGTTTGTAGGAACATTCATACTAATATATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACAATGGAGCAGAATCACTTATGGGAAATGCAGCTTGTGCTGGATTAACAGTCATGTTCATTATTCTCTCAATTGGTCACATCTCAGGTGCACATCTCAATCCATCACTCACCATCGCATTCGCAGCATTTCGCCATTTCCCTTGGGGACATGTTCCTGCCTACATTGCAGCACAAGTCTCTGCTTCGATCTGCGCTTGCTATGCTCTCAAAGTTGTCTACCATCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTCGACGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTCACTGCTGTTGCTACTGATTCCCGTGCGGTTGGTGAATTGGCTGGTATCGCTGTTGGTGCTACGGTTTTGCTCAACATTCTTATCTCAGGGCCAACAAGTGGTGGTTCGATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATATCTGGATATATTTGGTGGCGCCAACACTTGGTGCTCTCGCTGGTTCTGGAGTTTATACGCTTATCAAGCTGCGTGACAATGAAGCTGAACCGCCACGAACGGTTAGGAGCTTCCGTCGCTAG 897 0.4794 MTESEIGTPTAASVPATPDTPGGPLFSSVRIDSLERESFAMGRCNMCMPGGKSNGCINIASGVGIPSVSLAQKIGAEFVGTFILIYAATAGPIVNNKYNGAESLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWGHVPAYIAAQVSASICACYALKVVYHPFLSGGVTVPTVDVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGVYTLIKLRDNEAEPPRTVRSFRR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04268 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Tsu01g04268 298 PANTHER AQUAPORIN NIP2-1 10 295 IPR034294 -
Tsu01g04268 298 SUPERFAMILY Aquaporin-like 69 287 IPR023271 -
Tsu01g04268 298 Gene3D Glycerol uptake facilitator protein. 65 292 IPR023271 -
Tsu01g04268 298 MobiDBLite consensus disorder prediction 1 25 - -
Tsu01g04268 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04268 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04268 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04268 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04268 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04268 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04268 298 PANTHER AQUAPORIN NIP5-1-RELATED 10 295 - -
Tsu01g04268 298 MobiDBLite consensus disorder prediction 1 15 - -
Tsu01g04268 298 Pfam Major intrinsic protein 67 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04268 Tsu-Chr1 50485213 50491550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04268 25 298 Major Intrinsic Protein MIP AT4G10380 69.643 2.11e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04268 K09874 - gmx:100804356 510.375