Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04262 ATGGAAAATATTAGTGTTAATGTTACctctttgttctttttcttcatcttttttagCTTAAAGATAGAACAAGTAATATCTCTTTCATCTGATGGAGAAGCACTTCTTTCTCTTGCAACATCATCaccttctcttctttcttcatGGAACCCTTCAACCTCAACACCTTGTTCATGGAAAGGTATAACTTGTTCACCACAATCTAGAGTAATTTCCCTTTCTATCCCTGATACTTTCCTTAACCTTACATCTTTACCACCTCAACTATCCTCTTTAACAATGCTTCAACTTCTCAACCTCTCTTCAACCAATCTTTCTGGCTCAATCCCACCTTCTTTTGGTCAACTCTCTCATCTTCAACTCCTTGACCTTTCTTCAAACTCTTTAACTGGTTCCATTCCTAAGGAGCTAGGAAGCCTCTCATCTCTTCAGTTTCTTTTCTTGAACTCAAATAGATTAACAGGAACCATTCCTCAACAGCTTTCTAATCTCACTTCACTTGAAGTTCTTTGTCTTCAAGATAATCTTTTCAATGGTTCAATTCCTTCACAGTTAGGCTCTTTGAAATCTCTTCAGCAGTTTAGGATAGGTGGTAACCCTTTCCTCACAGGAGAACTACCTTCACAGTTAGGACTATTAACCAACCTTACAACATTTGGTGCAGCTGCAACTTCACTTTCAGGTTCCATTCCTTCAACATTTGGAAACTTGATCAATCTACAAACACTAGCACTTTATGATACTGAAATTTCTGGATCAATACCATCAGAACTTGGTTTATGTTCTGAGTTGAGAAATCTTTATTTACATATGAACAATCTCACTGGATTTATTCCTCATGAATTAGGTAAGTTGCAAAAACTTACTAGTTTACTTCTTTGGGGGAATTCATTATCTGGTAAAATCCCTTCTGAAATTTCAAACTGTTCATCATTAGTTATATTTGATGTATCTTCTAATGATCTATCTGGTGAAATACCTGGTGATTTTGGGAAGTTAGTTGTTCTTGAACAGCTTCATTTGTCGGATAATTCGCTCAGTGGCGAAATACCGTGGCAGTTGAGTAACTGCACTAGTCTTGCAACAGCTCAGCTTGACAAGAATCAGTTATCAGGTACAATTCCTTATCAGATTGGTAAATTGAAGGTTCTCCAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCTTCTTCATTTGGAAACTGTACTGAACTTTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTCTATTCCAGAAGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAATTCATTAACAGGAAAGTTACCAGCAAGTGTTGCAAATTGTCAGTCTTTGGTTAGGTTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAAATAGGAAAGTTGCAGAATCTTGTGTTTCTTGATTTGTACATGAATCATTTCTCCGGTAGATTACCAGTTGAGATAGCAAATATTACAGTTCTTGAGCTTTTAGATGTGCATAACAATTACCTTGGAGGCGAAATTCCGTCGCTGATTGGAGAACTTGAAAATTTGGAGCAGCTTGATCTAAGTAGAAACAGTTTGACAGGTGAAATCCCTTGGAGTTTCGGAAATTTGAGTTATTTGAATAAGCTTATTCTCAACAATAATTTGTTAACAGGTTCAATACCTATATCTGTTAGAAATTTGCAGAAGCTAACTCTATTGGATTTGAGTTATAACAGCTTATCTGGTTCCATACCTTCAGAGATTGGTCATGTTACAAGCTTAACCATAAGTTTGGATTTGAGTTCAAATTCATTCACAGGTGAAATACCAGATTCTATGTCTGCTTTGACACAATTACAATCACTTGATCTTTCAAGGAACATGCTTCATGGAGGAATTAAGGTTCTTGGTTCTTTAACTAGTCTCACTTATCTCAATATCTCCTACAACAACTTCTCAGGTCCAATTCCAGTAACTCCATTCTTCAAAACTATAACTTCTGGTTCATATCTTCAGAACCGGAATCTGTGTCAGTCCATTGACGGTACTACATGTTCTTCGAGTTTGATTCAAAAGAATGGTTTAAAATCTGCAAAAACCGTAGCTATGATCACAATTATTCTAGCTTCGGTTACCATAATTGTCATTGCGTCGTGGATTCTGGTAACTCGTAGTAATCATCGATACAACGTTGAGAAAGCTTTGAGGATATCAGGCTCCGCGTCAGGAGCCGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGATAATATCTTGGATTGCTTGAAAGATGAAAATGTGATCGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAGATGCCGCATGGAGAGGTTATAGCAGTGAAAAAGctttggaaaacaaacaaagGAGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATTCTCGGCTACATTCGACATAGAAACATTGTGAGGCTCATAGGTTATTGTTCTAATGGGAGTGTTAAGCTTCTTCTCTATAACTACATCCAAAATGGTAATCTAAGACAGCTTTTGGAAGGGAATAGGAACTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGTTCAGCTCAGGGTCTATCTTACCTTCATCATGATTGTGTTCCATCAATTCTTCACAGAGATGTGAAGTGCAATAACATACTTCTAGATTCCAAATATGAGGCTTATATTGCAGATTTCGGGCTCGCAAAGCTAATGAATTCACCAAATTATCATCATGCAATGTCCAGAGTTGCCGGTTCCTATGGCTATATTGCTCCAGAGTACGGCTACACCATGAACATAACAGAGAAGAGTGATGTATACAGTTATGGAGTGGTTTTGCTAGAGATACTAAGCGGAAGAAGCGCCGTTGAATCTCAACATGTTGGAGATGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTTGAACCAGCTGTATCAATACTAGATACAAAGCTTCAAAGTCTACCAGATCAAATGGTGCAAGAAATGCTTCAAACACTCGGAATCGCTATGTTTTGTGTGAATTCTTCGCCAGTTGAACGTCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAATGTCAGCCTCATGAGGAGATGGGGAAAACCTCTCAACCTTTAATCAAACAGTCATCAACTCAATgctga 3228 0.3705 MENISVNVTSLFFFFIFFSLKIEQVISLSSDGEALLSLATSSPSLLSSWNPSTSTPCSWKGITCSPQSRVISLSIPDTFLNLTSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPKELGSLSSLQFLFLNSNRLTGTIPQQLSNLTSLEVLCLQDNLFNGSIPSQLGSLKSLQQFRIGGNPFLTGELPSQLGLLTNLTTFGAAATSLSGSIPSTFGNLINLQTLALYDTEISGSIPSELGLCSELRNLYLHMNNLTGFIPHELGKLQKLTSLLLWGNSLSGKIPSEISNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLSGEIPWQLSNCTSLATAQLDKNQLSGTIPYQIGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFSLQKLSKLLLLGNSLTGKLPASVANCQSLVRLRVGENQLSGEIPKEIGKLQNLVFLDLYMNHFSGRLPVEIANITVLELLDVHNNYLGGEIPSLIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGSIPISVRNLQKLTLLDLSYNSLSGSIPSEIGHVTSLTISLDLSSNSFTGEIPDSMSALTQLQSLDLSRNMLHGGIKVLGSLTSLTYLNISYNNFSGPIPVTPFFKTITSGSYLQNRNLCQSIDGTTCSSSLIQKNGLKSAKTVAMITIILASVTIIVIASWILVTRSNHRYNVEKALRISGSASGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPHGEVIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNYIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLSYLHHDCVPSILHRDVKCNNILLDSKYEAYIADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESQHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKCQPHEEMGKTSQPLIKQSSTQC 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04262 1075 PANTHER - 6 1071 - -
Tsu01g04262 1075 PANTHER UNNAMED PRODUCT 6 1071 - -
Tsu01g04262 1075 SMART LRR_typ_2 622 649 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 333 357 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 92 115 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 164 188 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 140 163 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 285 309 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 116 139 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 525 548 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 237 261 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 573 597 IPR003591 -
Tsu01g04262 1075 SMART LRR_typ_2 405 429 IPR003591 -
Tsu01g04262 1075 Gene3D Ribonuclease Inhibitor 433 693 IPR032675 -
Tsu01g04262 1075 SUPERFAMILY Protein kinase-like (PK-like) 761 1050 IPR011009 -
Tsu01g04262 1075 Gene3D Ribonuclease Inhibitor 27 199 IPR032675 -
Tsu01g04262 1075 PRINTS Leucine-rich repeat signature 525 538 - -
Tsu01g04262 1075 PRINTS Leucine-rich repeat signature 119 132 - -
Tsu01g04262 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Tsu01g04262 1075 Gene3D Phosphorylase Kinase; domain 1 753 853 - -
Tsu01g04262 1075 SMART serkin_6 776 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04262 1075 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Tsu01g04262 1075 Gene3D Ribonuclease Inhibitor 200 425 IPR032675 -
Tsu01g04262 1075 Pfam Protein kinase domain 778 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04262 1075 Pfam Leucine Rich Repeat 527 549 IPR001611 GO:0005515
Tsu01g04262 1075 SUPERFAMILY L domain-like 369 666 - -
Tsu01g04262 1075 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524
Tsu01g04262 1075 SUPERFAMILY RNI-like 98 481 - -
Tsu01g04262 1075 ProSiteProfiles Protein kinase domain profile. 776 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04262 1075 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Tsu01g04262 1075 Pfam Leucine rich repeat 603 658 IPR001611 GO:0005515
Tsu01g04262 1075 Pfam Leucine rich repeat 384 442 IPR001611 GO:0005515
Tsu01g04262 1075 SMART LRR_sd22_2 525 554 - -
Tsu01g04262 1075 SMART LRR_sd22_2 140 166 - -
Tsu01g04262 1075 SMART LRR_sd22_2 116 137 - -
Tsu01g04262 1075 SMART LRR_sd22_2 622 647 - -
Tsu01g04262 1075 SMART LRR_sd22_2 573 596 - -
Tsu01g04262 1075 Gene3D Transferase(Phosphotransferase) domain 1 854 1071 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04262 Tsu-Chr1 50415814 50419616 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04262 26 1069 Receptor kinase-like Gene Family AT5G56040 45.472 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g04262 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04262 - - ccaj:109812175 1738.01