Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04252 ATGGCAGCTGTGATTTCTTCACCTATGGCTCAGTCTCCGACTATTGTGGCTCCGGCCACAGCCGCATTGACCACTGGTGGTCCATTTGCTAATGCATCGCTTTATGTTGGTGATCTGGAAGGGAGTGTCAATGAGGGACAACTTTTTGATCTCTTTAGCCAAGTTGCTCAGGTTGTCTCTATTAGGGTTTGTAGGGATCAGACTAGACGATCCTCTCTCGGTTACGCTTATGTTAACTTCACCAATGCTCAGGATGCGGCCAATGCGAAGGAACTTTTGAATTTCACTCCTCTGAATGGGAAACCCATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGGAAGAGTGGATCTGGCAATGTGTTCATCAAGAACTTGGACACATCAATTGATCACAAGGCATTGCATGACACTTTTGCTGCTTTTGGCATTGTGCTGTCTTGTAAGGTGGCTCTGGACAGTAGTGGTCAGTCAAAAGGGTACGGTTTTGTACAGTTTGAACATGAAGAAGCTGCAAAGAGTGCCATCAAACAGTTGAATGGCATGTTGATCAATGATAAACAAGTCTATGTTGGATTTTTTGTTCGCCACCAGGAAAGGGTTAGGACAAATGGATCACCCAAGTTCACCAATGTTTTTGTGAAAAATCTTTCTGAAACACTAAATGATGAAGACTTGAAGCAGTTATTTGGCCCCTTTGGTGCGATAACTAGTGCAACAATCATGAAAGACACAAATGGTAAATCTAGATGCTTTGGTTTTGTCAATTTTCAGAGTTCAGATTCAGCAGCTGCTGCAGTTGAGAAGTTAAATGGGACCATCAATGATGCCAAGGTTTTATTTGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGCATGAGTTGAAAGCTAAATTTGAGCAGGAAAAAATTAGTAGATATGAGAAACTACAAGGGGCTAATTTGTACTTGAAAAATCTTGATGATGATTTTACTGATGACAAGTTAAAGGACTTGTTTTCTGAATTTGGAACCATAACATCTTGCAGGGTGATGTTGGATTCCCATGGTCATAGCAAGGGTTCTGGTTTCGTTGCATTTTCTAATCCTGAGGAAGCAAATAAAGCGTTGAATGAAATGAATGGGAAGTTGGTTGGACGAAAGCCTCTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAATTGCAGGCTCATTTTGCTCAAATCCGTGCCCCTGGTGGATTGGCACCGTTGGCTGGAGCAattcctggataccatccaggaGCACCGAGACTTGCCCCTCAGCAACTGTATTTTGGTCAAGGCACTCCTGGTTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAACAAATTTTGCCTGGAATGCGGCCTGGTGTTGCTCCAAATTTTGTTATGCCATATCAACTCCAAAGACAGGGACAAAATGGGCAAAGGATAGGTGCTCGTCGCAATGGAAATCTCCAACACGTGCACCAGAACCAAATGATGCATCGTAACTCCAATCAAGGTTTTAGATACATGGGTAACAATCGAAATGGCATGGATCCATCTGGAGTTCCTCAAGGTCTAGCTGGTCCAATGTTGCCTATGACATTTGATGGTTCTGGAGTTACTGCACCTATTGATAATCAGCGTCCAGGGTCTACATCACTTGCCTCGGCTTTAGCTTCTGCAACTCCAGAAAATCAGCGCATGATGTTGGGTGAGCATCTATATCCTCTTGTGGACCGGCTAACACCAAATCAACATACTGCAAAGGTGACAGGGATGCTGCTTGAAATGGATCAATCAGAAGTAATTCATCTTATTGAATCTCCTGATGACCTAAAAACAAAGGTCTCTGAGGCTTTGCAGGTCCTTCACAATGCTGCATCGGGATCAGAAGTTGGTGATCAGCTTGGTTCGTTGTCATTGAATGAATGA 1941 0.4333 MAAVISSPMAQSPTIVAPATAALTTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGIVLSCKVALDSSGQSKGYGFVQFEHEEAAKSAIKQLNGMLINDKQVYVGFFVRHQERVRTNGSPKFTNVFVKNLSETLNDEDLKQLFGPFGAITSATIMKDTNGKSRCFGFVNFQSSDSAAAAVEKLNGTINDAKVLFVGRAQRKAEREHELKAKFEQEKISRYEKLQGANLYLKNLDDDFTDDKLKDLFSEFGTITSCRVMLDSHGHSKGSGFVAFSNPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGLAPLAGAIPGYHPGAPRLAPQQLYFGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVHQNQMMHRNSNQGFRYMGNNRNGMDPSGVPQGLAGPMLPMTFDGSGVTAPIDNQRPGSTSLASALASATPENQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDDLKTKVSEALQVLHNAASGSEVGDQLGSLSLNE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04252 646 Pfam Poly-adenylate binding protein, unique domain 561 626 IPR002004 GO:0003723
Tsu01g04252 646 Gene3D - 121 204 IPR012677 -
Tsu01g04252 646 SMART poly_2 565 629 IPR002004 GO:0003723
Tsu01g04252 646 Gene3D - 311 410 IPR012677 -
Tsu01g04252 646 SUPERFAMILY PABC (PABP) domain 502 631 IPR036053 GO:0003723
Tsu01g04252 646 CDD RRM2_I_PABPs 118 194 IPR045305 -
Tsu01g04252 646 Gene3D - 552 631 - -
Tsu01g04252 646 SUPERFAMILY RNA-binding domain, RBD 120 292 IPR035979 GO:0003676
Tsu01g04252 646 SMART rrm1_1 315 387 IPR000504 GO:0003723
Tsu01g04252 646 SMART rrm1_1 121 193 IPR000504 GO:0003723
Tsu01g04252 646 SMART rrm1_1 33 106 IPR000504 GO:0003723
Tsu01g04252 646 SMART rrm1_1 212 284 IPR000504 GO:0003723
Tsu01g04252 646 PANTHER POLYADENYLATE-BINDING PROTEIN 27 633 - -
Tsu01g04252 646 CDD RRM1_I_PABPs 33 112 - -
Tsu01g04252 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Tsu01g04252 646 Gene3D - 205 310 IPR012677 -
Tsu01g04252 646 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Tsu01g04252 646 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 626 IPR006515 GO:0003723
Tsu01g04252 646 Coils Coil 283 303 - -
Tsu01g04252 646 CDD RRM3_I_PABPs 210 289 - -
Tsu01g04252 646 PANTHER RNA BINDING PROTEIN 27 633 - -
Tsu01g04252 646 SUPERFAMILY RNA-binding domain, RBD 311 402 IPR035979 GO:0003676
Tsu01g04252 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Tsu01g04252 646 CDD RRM4_I_PABPs 313 391 - -
Tsu01g04252 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Tsu01g04252 646 Gene3D - 27 120 IPR012677 -
Tsu01g04252 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Tsu01g04252 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 275 IPR000504 GO:0003723
Tsu01g04252 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Tsu01g04252 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Tsu01g04252 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Tsu01g04252 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 631 IPR002004 GO:0003723
Tsu01g04252 646 SMART rrm2_1 212 283 IPR003954 GO:0003676
Tsu01g04252 646 SMART rrm2_1 121 193 IPR003954 GO:0003676
Tsu01g04252 646 SMART rrm2_1 315 387 IPR003954 GO:0003676
Tsu01g04252 646 SMART rrm2_1 33 106 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04252 Tsu-Chr1 50367558 50371366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04252 1 626 Eukaryotic Initiation Factors Gene Family AT1G22760 56.630 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04252 K13126 - gmx:100783163 1038.1