Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04251 ATGGCAGCTGTGATTTCTTCATCTATGGCTCAGTCTGAAACTGTTGTTGTAGCTCCGGTGACAGCAGCATTGACTAGTGGAGTCTCATTCGCGAATGCATCCCTTTATGTTGGTGATCTGGAAGGGACTGTGAATGAGGGACAACTCTTTGATCTGTTTAGTCAAGTTGCTCAAGTTGTCTCTATTAGGGTTTGTAGGGATCAGACTAGAGGATCCTCTCTCGGTTACGCATACATTAACTTCACCAATGCTCAAGATGCGGCCAATGCGAAGGAACTGTTGAACTTCACTCCTCTGAATGGGAAACCTATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGGAAAAGTGGAAATGGCAATGTGTTCATTAAGAACCTGGACAAATCGATTGATCACAAGGCATTGTACGACATTTTTGCGTTCTTTGGCTCTATACTTTCGTGTAAACTGGCTCTTGACGGCAATGGTCAGTCAAAAGGGTATGGTTTTATACAGTTTGACAACGAAGAATCTGCGAAGAATGCCATCAAACAGTTGAATGGCATGTTGCTAAATGATAAACAAGTATATGTTGGATTTTTCGTTTGCCACCAGGAAAGAGCTAGGACCAATCAATCACCTAAGTTTACTAATGTGTATATTAAAAATCTTTCTGAAACACACAGTGATGAAGACTTGAAGAAGCTATTTAGCCCTTTCGGCACAATAACTAGTGCAAGAGTCATGAAAGATGgaaatggaaaatcaagatgCTTTGGTTTTGTTAATTTTCAGAATCCAGATTCTGCTGCTGCTGCAGTTGAGAACTTAAACGAAACTACTATCAACGGTGACAAAGTTTTATTTGTGGGGAGAGCCCAAATCAAATCAGAAAGGGAGCAAGAGTTGAAAGCCAAATTAGAGGCGGAAAAAATGAGTAGATACGAAAAGTTACAGAGGGCTAATCTGTACTTGAAAAACCTTGATGATGGATGTACTAACGAAAAGTTGAATGATTTGTTTTCTAAGTTCGGAACCATAACATCTTGCAAGGTGATGTTGGATTCTCGTGGTCGTAGTACTGGTTCTGGTTTTGTGGCATTTTCTACTCCAGAGGAAGCCAACAAAGCGATGAATGAAATGAATGGTAAGTTTCTTGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCTCAGTTGCAGGCTCATTTTGCTGAAATTGTTGTCCCTGGTGGATTGGCACCGCCAGCTGCAGGAATTCATGTTTCCTATCCAGAGGGTCAAGGCACATGTGTCTTCATACCACGTCAGCCTGCTGGATTTGCTGGTGGAATGCAGCCCGGCTTTGCTCCAAATTTTGTTATGCCGTATCAACTGCAGAGACAGGGTCAAAATGGGCAAAGGAGAGGTGCTCGACGAAATGGAAATCTCCAACATTTGCACCAGAACCAAATGACACATCGTAACTCCAACCAAGGTTTTAGATACGTGGCTAAGAATCGGAATGGCAGGCATTCGTCTGGAGTTCCTCGTGGTCTAGCTGGTCCAATGTTGCCTATGACATCTGATGGTTCTGGAGTTACTGCACCTATTGATAATCAGCATCCCGGGTCTACATCACTTGCCTCAGCTTTAGCTTCTGCAACTCCAGAAAATCAGCGCATGATGTTGAGCGAACATCTTTATCCCCTTGTGGACCGTCTTACGGCAAATGAACTTACAGCAAAGGTGACAGGGATGTTACTTGAAATGGACCTAGCAGAAGTAATTAATCTCATTGAATCTCCAGATGATCTGAAAATAAAGGTTTCGGAGGCATTGGAGATCCTTCATGACGATGCTTCGGAATCGAAGGCTGGTGATCAACTTGATCCGGCAGCTTGGTGGTTAGCGCGAAAAGCTGTTCTGCGTGGGCTCGTAACTCAAAACTCCGGTGGGCTCGTAACCCACAAGAGCTGTTCTGCGTCTGAAACGGCAAGAAGCTCTACTGGTTGCAAGATGTTTATTAGAGGAAATGGATCAATGATGGTGGCACCGGTTCACATGTTTCTAAGGATTCAATTTCTAGTTGTTCAATGGAATTGGGTTAATCTGTATTGA 2103 0.4294 MAAVISSSMAQSETVVVAPVTAALTSGVSFANASLYVGDLEGTVNEGQLFDLFSQVAQVVSIRVCRDQTRGSSLGYAYINFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGNGNVFIKNLDKSIDHKALYDIFAFFGSILSCKLALDGNGQSKGYGFIQFDNEESAKNAIKQLNGMLLNDKQVYVGFFVCHQERARTNQSPKFTNVYIKNLSETHSDEDLKKLFSPFGTITSARVMKDGNGKSRCFGFVNFQNPDSAAAAVENLNETTINGDKVLFVGRAQIKSEREQELKAKLEAEKMSRYEKLQRANLYLKNLDDGCTNEKLNDLFSKFGTITSCKVMLDSRGRSTGSGFVAFSTPEEANKAMNEMNGKFLGRKPLFVAVAQRKEERKAQLQAHFAEIVVPGGLAPPAAGIHVSYPEGQGTCVFIPRQPAGFAGGMQPGFAPNFVMPYQLQRQGQNGQRRGARRNGNLQHLHQNQMTHRNSNQGFRYVAKNRNGRHSSGVPRGLAGPMLPMTSDGSGVTAPIDNQHPGSTSLASALASATPENQRMMLSEHLYPLVDRLTANELTAKVTGMLLEMDLAEVINLIESPDDLKIKVSEALEILHDDASESKAGDQLDPAAWWLARKAVLRGLVTQNSGGLVTHKSCSASETARSSTGCKMFIRGNGSMMVAPVHMFLRIQFLVVQWNWVNLY 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04251 700 CDD RRM1_I_PABPs 34 113 - -
Tsu01g04251 700 PANTHER POLYADENYLATE-BINDING PROTEIN 24 619 - -
Tsu01g04251 700 Gene3D - 207 311 IPR012677 -
Tsu01g04251 700 Gene3D - 312 407 IPR012677 -
Tsu01g04251 700 Gene3D - 28 121 IPR012677 -
Tsu01g04251 700 PANTHER RNA BINDING PROTEIN 24 619 - -
Tsu01g04251 700 Pfam Poly-adenylate binding protein, unique domain 546 611 IPR002004 GO:0003723
Tsu01g04251 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Tsu01g04251 700 SUPERFAMILY PABC (PABP) domain 452 623 IPR036053 GO:0003723
Tsu01g04251 700 CDD RRM4_I_PABPs 316 393 - -
Tsu01g04251 700 SUPERFAMILY RNA-binding domain, RBD 206 296 IPR035979 GO:0003676
Tsu01g04251 700 SMART rrm1_1 122 194 IPR000504 GO:0003723
Tsu01g04251 700 SMART rrm1_1 317 389 IPR000504 GO:0003723
Tsu01g04251 700 SMART rrm1_1 34 107 IPR000504 GO:0003723
Tsu01g04251 700 SMART rrm1_1 213 286 IPR000504 GO:0003723
Tsu01g04251 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 193 IPR000504 GO:0003723
Tsu01g04251 700 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 616 IPR002004 GO:0003723
Tsu01g04251 700 SUPERFAMILY RNA-binding domain, RBD 314 401 IPR035979 GO:0003676
Tsu01g04251 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Tsu01g04251 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Tsu01g04251 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 281 IPR000504 GO:0003723
Tsu01g04251 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 385 IPR000504 GO:0003723
Tsu01g04251 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Tsu01g04251 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Tsu01g04251 700 Gene3D - 122 206 IPR012677 -
Tsu01g04251 700 Gene3D - 536 616 - -
Tsu01g04251 700 SMART rrm2_1 34 107 IPR003954 GO:0003676
Tsu01g04251 700 SMART rrm2_1 213 285 IPR003954 GO:0003676
Tsu01g04251 700 SMART rrm2_1 317 388 IPR003954 GO:0003676
Tsu01g04251 700 SMART rrm2_1 122 194 IPR003954 GO:0003676
Tsu01g04251 700 Coils Coil 285 305 - -
Tsu01g04251 700 CDD RRM2_I_PABPs 119 195 IPR045305 -
Tsu01g04251 700 SMART poly_2 550 614 IPR002004 GO:0003723
Tsu01g04251 700 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 33 611 IPR006515 GO:0003723
Tsu01g04251 700 CDD RRM3_I_PABPs 211 291 - -
Tsu01g04251 700 SUPERFAMILY RNA-binding domain, RBD 33 197 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04251 Tsu-Chr1 50355651 50360155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04251 1 611 Eukaryotic Initiation Factors Gene Family AT1G22760 53.125 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04251 K13126 - gmx:100783163 879.011