Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04240 ATGGCTTCCTCTCAGTCCCAGCATCGCTGTGTCTTTGTTGGGAATATACCCTATGATGCAACAGAGGAACAGCTTATTGAAATTTGCCAAGAAGTTGGTCCTGTAGTTTCTTTCagATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGTGGGGGACCAGGAATGACATCAAATGCTGACCCTCAGAAACAGGTTGGCATCCCGGCTGTCCAAGGGGATTCTGCCCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCAGCTCTTGGTGGCGCTCAGACTGGTATCCAGTCAAATCAAAATGGTTTGCAGAACCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCTGAGCTTAAGGGAATGGCTACACACAACAAGGAGATGTCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTTGGGATGGTCACCCCTCAAATGTTACAATTGCCGAACCTTAGACAAGTTTCAGATCAAACCTCACAGTCTTTAATGAATGAAGGCCTCCTTAGCCAGCCTCAGCAAACATTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAACTTGCAGTCTGGCATGGCACCTTACATTCAAGAAGGCCAAGTCAGCACTCTACCTCATAACCCTTTGGCTCCTAATCAATTAACCACAAATCCAAAGCCTCCAATGCAGCCTCGAATTCCCCTTCAACATTACCCAAGCAACCAATTTGTACAGCTCGGAACAGGACAGTCTAATTTAATGCATCCTTCTGTACGTCCCCCGCCTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCAGCAAATTCAGCTGCTTTGAACCAGCAATCTCATGCCCCGTACCTACAGCATCCAGTACGTGTTGGAAACTCAACTGTCTCGCATAATATTCAAATGGTTCGTCCAGATGCAAGCTTTCAGGCTGGGCCCTCCACTTCATCTGGTATTCCTCAGTTATTTAGTAAGGAAGGTAATAGTAAATATTCAAACATGTCTTCAGGAGTAGTAGAGAATACTGGCATGGTTCGGGATATTCCAGAATCTTTTACTCGACCATCAAAGCTCACTAAATTGAATGATGGAAGGGGATCCTCTCTCGCTGCTGTGACTGCAGTCATGCCTGTCTCCAATGGATCATCCCATATGCTTGGAAGTAGTTCATTACCTGTGCCTGCAGTTCCTAAAGCAGAAGTGCTGCATTCTGATCAACAATCTTCACAGTCGCAGCTTCCATCTGATGTGGAGTCTGCTTTATTGCAACAAGTGTTGAACCTAACACCAGAACAATTGAGTTCCCTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAGCGAGATCAGATGCAGCACTCATAA 1635 0.4532 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRGGPGMTSNADPQKQVGIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTGIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQLPNLRQVSDQTSQSLMNEGLLSQPQQTLVQTVAALPPYGQSNLQSGMAPYIQEGQVSTLPHNPLAPNQLTTNPKPPMQPRIPLQHYPSNQFVQLGTGQSNLMHPSVRPPPLGSLSVRPPIQPANSAALNQQSHAPYLQHPVRVGNSTVSHNIQMVRPDASFQAGPSTSSGIPQLFSKEGNSKYSNMSSGVVENTGMVRDIPESFTRPSKLTKLNDGRGSSLAAVTAVMPVSNGSSHMLGSSSLPVPAVPKAEVLHSDQQSSQSQLPSDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04240 544 Gene3D - 1 115 IPR012677 -
Tsu01g04240 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Tsu01g04240 544 Pfam Transcription termination and cleavage factor C-terminal 505 538 IPR026896 GO:0031124
Tsu01g04240 544 MobiDBLite consensus disorder prediction 393 413 - -
Tsu01g04240 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Tsu01g04240 544 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 539 - -
Tsu01g04240 544 MobiDBLite consensus disorder prediction 81 96 - -
Tsu01g04240 544 Gene3D - 499 540 IPR038192 -
Tsu01g04240 544 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 539 - -
Tsu01g04240 544 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 233 IPR025742 -
Tsu01g04240 544 SMART rrm1_1 10 83 IPR000504 GO:0003723
Tsu01g04240 544 Gene3D - 153 237 - -
Tsu01g04240 544 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Tsu01g04240 544 CDD RRM_CSTF2_CSTF2T 11 85 - -
Tsu01g04240 544 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04240 Tsu-Chr1 50239769 50245404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04240 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.95e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04240 K14407 - gmx:100794399 731.865