Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04236 ATGGGTTTACCTTCATCTTCATTAGACACAAATTGGTTTATGTTTACAATTCCAACCATACCACTTAACAATCTCCTCTTGGTGATCTTACTTGCACTATTTTCCATTTCATTTCTAAAATGGACTATCCCAAAAGGAGGAATAGCTTGGAGAAATAATAGGAACCAAATGGGTCGAATCCATATACAAGGACCAAAAGGTCTCCCAATATTTGGCATCTTATTCGCCTTAAACCATGACCTACCTCACCGAACACTTGCATCCATAGCTTCAACCCTATCATCCACAAAACAACTCATGGCCTTTAGTTTAGGCTCAACACCTGCGGTTATCACCTCAAACCCTAGCATAGCGCGTGAAATTTTGAACTCACCGCATTTTTCAAATCGTCCGATTAAACAATCCGCTAAAAGCCTTATGTTTAGTCGAGCCATTGGTTTTGCACCAAACGGAACCTATTGGCGTTCGCTACGTAGGGTTGCATCAACTCACCTTTTTTCTCCAAGGCGCATTATAGCCCACGAAGCTGGTCGTAGGCTAGATTGTGTTATCATGTTAAACACCATAGCTTATGAACAATCCAAGCatggatttgtttgtttaagaaaaCACCTTCAAGATGCAGCTCTTAATAATGTTATGGGCACTGTTTTCGGAAGTAGACTTCACAACCGAGAACAGTGCCACATTAAAGAGCTACATGAGATGGTGAAGGAAGGGTTTGAGCTTCTAGGAGCTTTCAATTGGTCTGATTATGTGTCATGGATTAGCTTCTTTTATGATCCTTACCATATTCGTGAAAGGTGCTTAGTTCTTGCTCCTCGTGTTAAGAAATTTGTCAAGATGATTTTGGATGAACATCGAATGGCTTCATCGTCCAAAACGATATCTGATGATTCTGACTTTGTAGATGTTCTACTCTCTCTTGAAGGGGACGAGAAGCTCCAAGACGATGACATCATTGCCATTCTTTGGgAGATGATATTTCGTGGCACCGATACAACCGCACTTCTTACTGAATGGATAATGGCAGAACTTATTTTGaatcaacaaatccaaacaaagcTTCTAGAAGAACTTAACAATGTTGTTGGAAACAAAAACAACGTTACAGATGCTGATGTTACAAAAATGCCATATCTTGAAGCTATTGTGAAAGAAACATTACGTGTTCATCCAATTGGGCCTCTTCTTTCATGGGCCCGTTTATCCACATCGGATGTCCAGCTCAGCAATGGGATGGTGGTCCCTACCAATACTACAACAATGGTCAATATGTGGGCTATAACCCATGATCCAAATATTTGGGCTGATCCATTTGTGTTTAAGCCCGAAAGGTTTTTGAAGAGTGAAGGGGGTGTTGAAGTAGATGTGAGGGGTGTTGATTTAAGGCTTGCACCATTTGGAGCTGGTCGTAGGGTTTGTCCTGGGAGGAACCTAGGACTTGTGACTGTGAGTCTTTGGGTTGCTAGATTGGTTCACAAGTTTCATTGGGTTCAAGATTTGACTAACCCTATTGATCTTAGTGAGGTGCTCAAGTTATCTTGTGAGATGAAGAACCCTCTCAAAGGTGTAGCTATTCCTAGGCTTGTTTAA 1596 0.4029 MGLPSSSLDTNWFMFTIPTIPLNNLLLVILLALFSISFLKWTIPKGGIAWRNNRNQMGRIHIQGPKGLPIFGILFALNHDLPHRTLASIASTLSSTKQLMAFSLGSTPAVITSNPSIAREILNSPHFSNRPIKQSAKSLMFSRAIGFAPNGTYWRSLRRVASTHLFSPRRIIAHEAGRRLDCVIMLNTIAYEQSKHGFVCLRKHLQDAALNNVMGTVFGSRLHNREQCHIKELHEMVKEGFELLGAFNWSDYVSWISFFYDPYHIRERCLVLAPRVKKFVKMILDEHRMASSSKTISDDSDFVDVLLSLEGDEKLQDDDIIAILWEMIFRGTDTTALLTEWIMAELILNQQIQTKLLEELNNVVGNKNNVTDADVTKMPYLEAIVKETLRVHPIGPLLSWARLSTSDVQLSNGMVVPTNTTTMVNMWAITHDPNIWADPFVFKPERFLKSEGGVEVDVRGVDLRLAPFGAGRRVCPGRNLGLVTVSLWVARLVHKFHWVQDLTNPIDLSEVLKLSCEMKNPLKGVAIPRLV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04236 531 Pfam Cytochrome P450 63 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 Gene3D Cytochrome P450 52 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 468 477 IPR017972 GO:0005506|GO:0016705
Tsu01g04236 531 PRINTS E-class P450 group I signature 475 498 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS E-class P450 group I signature 208 226 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS E-class P450 group I signature 465 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS E-class P450 group I signature 425 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS P450 superfamily signature 475 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PRINTS P450 superfamily signature 466 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PANTHER CYTOCHROME P450 FAMILY 78 PROTEIN 1 529 - -
Tsu01g04236 531 SUPERFAMILY Cytochrome P450 64 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g04236 531 PANTHER CYTOCHROME P450 78A7-RELATED 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04236 Tsu-Chr1 50220595 50223422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04236 6 525 Cytochrome P450 AT5G09970 61.321 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04236 K20619 - pvy:116124806 712.22