Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04235 ATGTATCTTGGTGTAAGAAAAAGACCATGGGGAAAATATGCAGCTGAAATTAGGAATCCATATACCAAAGTGAGACATTGGTTAGGCACATTTAACACTGCTGAAGAAGCTGCAATAGCATATGATATTTCATCTATTAATATTTGTGGTATTGATAATGCTAGAACTAATTTTCATTACCCTTTTGTATCTCAGTCACAACCTCCTTTGTCATTATTACTTCCTGCACCTCCACAACCTAACCCAGTGTTGGATGCAATCAGTATCCCAGAGATGAATGTTGgttttgatggtgatgatgaatcTCTTGTTATTGCTTCTATCTTGCAAACTTTTTCTAATTCTGGTAGTTGTTCCTTATAA 363 0.3333 MYLGVRKRPWGKYAAEIRNPYTKVRHWLGTFNTAEEAAIAYDISSINICGIDNARTNFHYPFVSQSQPPLSLLLPAPPQPNPVLDAISIPEMNVGFDGDDESLVIASILQTFSNSGSCSL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04235 120 CDD AP2 2 58 IPR001471 GO:0003700|GO:0006355
Tsu01g04235 120 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 110 - -
Tsu01g04235 120 SMART rav1_2 1 65 IPR001471 GO:0003700|GO:0006355
Tsu01g04235 120 Gene3D AP2/ERF domain 1 60 IPR036955 GO:0003700|GO:0006355
Tsu01g04235 120 ProSiteProfiles AP2/ERF domain profile. 1 59 IPR001471 GO:0003700|GO:0006355
Tsu01g04235 120 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 110 - -
Tsu01g04235 120 SUPERFAMILY DNA-binding domain 2 60 IPR016177 GO:0003677
Tsu01g04235 120 PRINTS Ethylene responsive element binding protein signature 2 13 IPR001471 GO:0003700|GO:0006355
Tsu01g04235 120 PRINTS Ethylene responsive element binding protein signature 24 40 IPR001471 GO:0003700|GO:0006355
Tsu01g04235 120 Pfam AP2 domain 4 42 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04235 Tsu-Chr1 50215340 50215702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04235 2 60 AP2-EREBP Transcription Factor Family AT1G12890 71.186 2.04e-25 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g04235 AP2 1.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04235 - - gmx:100816937 167.162