Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04233 atggAGAGAAAGTTCTGTGCTTTGGTTTTCATTTCCGCTTTTTTGTTTCTGCTACTTCATCCACTATGGCTGGTTTCTGCTAACATGGAAGGTGATGCTTTACATAACTTGAGGACAAATTTGCAAGATCCTAACAATGTTTTGCAGAGTTGGGATCCTACACTAGTTAATCCGTGTACATGGTTTCATGTAACCTGCAACAATGATAATAGTGTCATAAGAGTTGATTTGGGAAATGCTGCTTTGTCCGGCACACTAGTTCCACAGCTTGGTCAACTCAAGAATTTGCAGTATCTGGAACTATACAGCAATAACATCACTGGTCCTATTCCAAGCGACTTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTTTACTTAAATCGGTTCAATGGCCCTATCCCGGATTCATTGGGCAAGTTGTCAAAATTGCGATTCCTCCGGCTGAATAACAACAGCTTGATGGGTCCTATTCCAATGTCACTGACTAATATTACTGCTCTCCAAGTTCTGGATTTGTCTAATAACCAGCTCTCAGGTGTGGTTCCCGATAATGGCTCCTTCTCATTATTCACTCCGATCAGTTTtgcaaacaacttgaatctttGTGGACCAGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCGTTTTCTCCACCTCCCCCTTTTGTTCCCCCACCACCAATCTCTGCCCCAGGAAGTGGCAGTGCAACTGGAGCAATAGCTGGAGGAGTTGCTGGCGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAAGAGTTTTTCTTTGATGTTCCTGCTGAAGAGGATCCCGAAGTTCATCTTGGGCAGCTTAAGAGATTCTCACTAAGAGAGTTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTTGGAAGAGGAGGGTTTGGTAAGGTGTACAAAGGACGATTGGCAGACGGTTCACTGGTTGCTGTCAAAAGATTGAAAGAGGAGAGGACACCGGGTGGGGAGCTTCAGTTTCAGACTGAAGTTGAGATGATCAGCATGGCTGTTCATAGAAATCTCCTCCGTTTACGTGGGTTTTGTATGACTCCGACAGAAAGATTACTTGTTTATCCGTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAGCGTCCTCCACATCAGGAACCACTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAAATCATTCACCGTGACGTGAAAGCTGCTAACATATTGTTGGATGAAGAGTTTGAGGCTGTTGTTGGGGATTTTGGATTGGCAAGACTTATGGATTACAAGGATACCCATGTGACAACTGCTGTTCGGGGTACAATTGGGCATATAGCTCCCGAGTACCTATCTACCGGCAAATCTTCAGAGAAAACTGATGTTTTTGGTTATGGTATCATGCTTCTTGAGCTTATCACTGGACAAAGAGCTTTTGACCTTGCTCGGCTTgccaatgatgatgatgttatgcTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAAAAGCTTGAAATGTTGGTGGATCCTGATCTTCAAACCAACTACATAGAAGCTGAGGTAGAACAGTTAATCCAGGTTGCACTACTCTGCACACAAGGTTCACCTATGGACCGGCCGAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGGGACGGTTTGGCAGAAAGATGGGACGAGTGGCAAAAGGGAGAAGTTCTACGCCAGGAAGTGGAACTCGCCCCTCATCCTAATTCCGATTGGATTGTTGACTCTACTGAAAATCTACATGCAGTTGAATTATCTGGTCCAAGGTGA 1881 0.437 MERKFCALVFISAFLFLLLHPLWLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNRFNGPIPDSLGKLSKLRFLRLNNNSLMGPIPMSLTNITALQVLDLSNNQLSGVVPDNGSFSLFTPISFANNLNLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGSGSATGAIAGGVAGGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKGEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04233 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Tsu01g04233 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Tsu01g04233 626 Gene3D Transferase(Phosphotransferase) domain 1 380 597 - -
Tsu01g04233 626 SUPERFAMILY Protein kinase-like (PK-like) 282 578 IPR011009 -
Tsu01g04233 626 Pfam Protein kinase domain 304 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04233 626 ProSiteProfiles Protein kinase domain profile. 303 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04233 626 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 15 626 IPR031048 GO:0004675|GO:0005102|GO:0006468
Tsu01g04233 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Tsu01g04233 626 Gene3D Ribonuclease Inhibitor 26 213 IPR032675 -
Tsu01g04233 626 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Tsu01g04233 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 626 - -
Tsu01g04233 626 SUPERFAMILY L domain-like 31 199 - -
Tsu01g04233 626 SMART serkin_6 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04233 Tsu-Chr1 50193332 50197615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04233 1 626 Receptor kinase-like Gene Family AT1G71830 88.498 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tsu01g04233 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04233 K13418 - gmx:100789884 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04233 01 50193332 50197615 Tsu01g04233 01 50193332 50197615 ECH