Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04225 ATGGCCGGCAATCACGAAACACCTTCCTCCACCTCTTCTCTCCACAATTTAACTTTCTCTCCCGATTTCCCATCCCGAATCCCCCTTACTTCCGATCAGCTCAACCACTGCAACAAAGCACTCGCTCTGTTGAAGGATAAGCTCCTTAACCCTAACACCATCTCTCAAGAGTTTCTTCACTTGCAGTCTAATAGGATAACGCTTAGTGAGACCACGAGACGATGCAATGTTGCTCTTAATTCTGTCAATATCGGCAAAAATCGATATAAAGACGTTATACCATTTGACAAGAACAGGGTCATTCTTAAATCGAGTTCAGATTATAGGTCTGAAGCACTGGGGTATATCAATGCAAGCCTTATCTCGACCTCTTCCGGTGGAACTGTGTCTGAATTTATAGCCACACAAGGCCCACTGCCACACACTTATGAGGATTTCTGGGAAATGATTATCCAATATCACTGTCCTGCAATTGTGATGCTTACTAGGTTGGTCGACAATTACAAGacgGTGAAATGTGGAGATTATTTTCAATCGGAGGATAGACCTAGAGAATTTGGTAATATCTCGCTTACTTGTAAATGGGCGAAAACTACTGAAACTTCACTTGTGCTGCGTCATTTGGAGGTGAACCATAAAGAGGTAGAAGATACACCATTATCTGTTTTGCATATTCAGTATCCCGAGTGGCCTGACCACGGAGTTCCAAATGATACTTTGGCTGTGCGtgaaattttgaaaagattGTACCATTTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATCGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTATCTGTGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAATACGTTTATTGCTATGAAGCTATCATAGATGAACTGGAAGACCTTGTATCTCAACAGTAA 999 0.4214 MAGNHETPSSTSSLHNLTFSPDFPSRIPLTSDQLNHCNKALALLKDKLLNPNTISQEFLHLQSNRITLSETTRRCNVALNSVNIGKNRYKDVIPFDKNRVILKSSSDYRSEALGYINASLISTSSGGTVSEFIATQGPLPHTYEDFWEMIIQYHCPAIVMLTRLVDNYKTVKCGDYFQSEDRPREFGNISLTCKWAKTTETSLVLRHLEVNHKEVEDTPLSVLHIQYPEWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTVSVFRSQRIGMVQTQDQYVYCYEAIIDELEDLVSQQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04225 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 243 315 IPR000387 GO:0016311|GO:0016791
Tsu01g04225 332 ProSiteProfiles PTP type protein phosphatase domain profile. 54 324 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 13 331 - -
Tsu01g04225 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 38 326 IPR029021 -
Tsu01g04225 332 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Tsu01g04225 332 SMART ptp_7 221 323 IPR003595 -
Tsu01g04225 332 Gene3D Protein tyrosine phosphatase superfamily 30 326 IPR029021 -
Tsu01g04225 332 Pfam Protein-tyrosine phosphatase 83 322 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 SMART PTPc_3 53 326 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PRINTS Protein tyrosine phosphatase signature 307 317 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PRINTS Protein tyrosine phosphatase signature 132 152 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PRINTS Protein tyrosine phosphatase signature 114 121 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PRINTS Protein tyrosine phosphatase signature 291 306 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PRINTS Protein tyrosine phosphatase signature 220 237 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 PRINTS Protein tyrosine phosphatase signature 258 276 IPR000242 GO:0004725|GO:0006470
Tsu01g04225 332 CDD PTPc_plant_PTP1 115 319 - -
Tsu01g04225 332 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 13 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04225 32 330 Protein tyrosine phosphatase (PTP) family AT1G71860 71.572 5.19e-168 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04225 - - gmx:548044 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04225 01 50109814 50116027 Tsu01g04225 01 50109814 50116027 ECH