Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04222 aTGGAGCCTCTTTCTTCCACCAAACAAACTAACCACAATAATCATCTTACTAAACCTTCTTCTCTACATGTTGAAACTCCACCACTTGATGAACCCAGTCCTCTCCGTAAAATCATGGTCGTTGCTTCCATCGCCGCCGGTGTTCAATTCGGTTGGGCACTTCAACTTTCTCTTTTAACTCCCTACGTTCAGTTACTCGGTATCCCTCATACTTGGGCCGCTTACATTTGGCTTTGCGGTCCAATTTCCGGTATGCTTGTTCAACCGATTGTCGGTTACCACAGCGACCGATGCACTTCACGCTTCGGTCGCCGTCGTCCATTCATAGCCGCTGGTTCATTCGCCGTCGCAATTGCCGTTTTCTTAATCGGTTACGCGGCTGATCTCGGTCACATGTTCGGCGATAATCTAGACAAAAAAGTCCGTCCACGTGCAATCGGAATCTTCGTCGTCGGATTCTGGATCCTTGACGTTGCTAATAACATGCTTCAAGGTCCTTGCCGTGCACTTCTCGGTGACCTTTGCGCCGGTAACCAACGCAAAACGAGAAACGCTAACGCGTTTTTCTCGTTTTTTATGGCCGTCGGTAATATCCTCGGTTACGCCGCCGGTTCATATAGTAAACTGTATCACATGTTTCCGTTCACGAAAACTAAAGCATGTGATGTTTACTGTGCAAATCTAAAAAGCTGTTTCTTCCTCTCAATCGCTTTATTAACCGTTTTAGCCACCGCAGCTTTGATTTAcgtgaaagaaaaacaaatcacGACGGAGAAAACGGTTACAGATGAAgacggtggtggtggtggtaatAGTATGCCATGTTTTGGGGAATTATCTGGTGCTTTTCGTGAACTAAAGAGACCTATGTGGATTTTATTATTAGTGACGTGTCTTAATTGGATTGCTTGGTTtccttttttgttgtttgatacTGATTGGATGGGAAAAGAAGTTTATGGAGGAACGGTTGGGGAAGGTAAAGCGTATGATAAGGGTGTACGTGCGGGTGCATTAGGACTTATGTTAAACTCAGTCGTTTTGGGTGTGACTTCGTTAGGAGTTGATGTGTTAGCGCGTGGAGTTGGGGGCGTGAAGAGGTTATGGGGAATAGTTAATTTTGTTCTTGCGATTTGTTTGGCTATGACGGTTTTGGTTACTAAATTGGCTCAACATTCGCGACACTATGTTGATGGTACTCAAGATCCTCTTCCACCTTCTGCCGGTATTAAAGCTGGCGCGTTGGCTCTCTTTTCCGTTCTCGGAGTTCCTCTCGCGATTACTTACAGCATACCCTTTGCTCTAGCATCTATATTCTCAGCAACCTCAGGGGCAGGCCAAGGGCTATCACTAGGAGTTCTCAATCTTGCAATTGTCATACCACAGATGATTGTCTCTGTTCTGAGTGGACCATGGGATGCTCTATTTGGAGGTGGTAACCTACCAGCTTTTGTGGTGGGTGCCGTCGCAGCTCTAGCAAGTGGCATACTATCTGTAATCTTACTACCGTCTCCACCACCAGATTTGGCCAAGTCCGTAGGCACTTCCGGAGGAGGCTTTCACTAA 1566 0.4451 MEPLSSTKQTNHNNHLTKPSSLHVETPPLDEPSPLRKIMVVASIAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIAAGSFAVAIAVFLIGYAADLGHMFGDNLDKKVRPRAIGIFVVGFWILDVANNMLQGPCRALLGDLCAGNQRKTRNANAFFSFFMAVGNILGYAAGSYSKLYHMFPFTKTKACDVYCANLKSCFFLSIALLTVLATAALIYVKEKQITTEKTVTDEDGGGGGNSMPCFGELSGAFRELKRPMWILLLVTCLNWIAWFPFLLFDTDWMGKEVYGGTVGEGKAYDKGVRAGALGLMLNSVVLGVTSLGVDVLARGVGGVKRLWGIVNFVLAICLAMTVLVTKLAQHSRHYVDGTQDPLPPSAGIKAGALALFSVLGVPLAITYSIPFALASIFSATSGAGQGLSLGVLNLAIVIPQMIVSVLSGPWDALFGGGNLPAFVVGAVAALASGILSVILLPSPPPDLAKSVGTSGGGFH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04222 521 CDD MFS_SLC45_SUC 38 497 - -
Tsu01g04222 521 PANTHER SUGAR TRANSPORTER 20 512 - -
Tsu01g04222 521 Gene3D MFS general substrate transporter like domains 35 261 IPR036259 -
Tsu01g04222 521 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g04222 521 SUPERFAMILY MFS general substrate transporter 36 506 IPR036259 -
Tsu01g04222 521 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 20 512 - -
Tsu01g04222 521 TIGRFAM GPH_sucrose: sucrose/H+ symporter 34 507 IPR005989 GO:0005887|GO:0008515|GO:0015770
Tsu01g04222 521 MobiDBLite consensus disorder prediction 1 29 - -
Tsu01g04222 521 Pfam MFS/sugar transport protein 46 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04222 Tsu-Chr1 50062554 50066372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04222 20 521 Sucrose Transporter Gene Family AT1G22710 68.110 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04222 K15378 - gmx:547679 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04222 01 50062554 50066372 Tsu01g04222 01 50062554 50066372 ECH
Tsu06g02130 06 26769652 26771913 Tsu01g04222 01 50062554 50066372 PCT