Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04218 ATGGGTACTTCGAATCTTCGCTTATTTTTGTTCTATCTCCTGAGTTTCTGTGTTATGGCGGCTGCTAAGGTCGTGCTGATTGGGAACAACACCACTCTTTCATTCGATGATATTGAAGCTAATTTCTCTCCGTCAGTTAAAGGGTCTGGAGAATATGGAGCCTTATTCTTGGCAGAGCCGCTTGATGCATGTACAGAACTTACAAATAAAGCTATACAACTTCCGAATGATAGTTCAccttttgttttgatgattagAGGAGGGTGTAGCTTTGAGGACAAGGTTAGGGTGGCACAAAATGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATTAGAATACATGCGGTATTTGTATCAAAAGCTTCGGGTGAAATACTAATGAAATACACTGGTTTGACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATTATGGCGATTTCATTTATTTCCCTGCTAGCTATGTCTGCAGTGTTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGGTTCTTCTCATGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGCTTGATTTTTACTTCTGCTTTGGAAGATAATTGTACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGCGTTGGAGAGAAACTCAGAATTCTACCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTCTGTCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCGTCAACGCCGTCATCTATGTCATCTTCTTTCGTGTCTTCTATGAGGTCATCGTTTGCTTCTTCTTCTGCAATACAAATTGCTTCACAGTCGCCATCTGCTTCTCGTAACCACTCTGTAGCTAGTACCCCTTACATGCAACCATCTCTAAGGTCCTACCGCCAGTCCCCCTCCCTAAGCGTCAGCCGTAGCTCTGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATTGGTTATCCATCTTTGTCATCTCTTAACTCAAGGTACTTGTCTTCACACATTCCAAGTCCAAGTAATGGTTCAGTTAGTTTCCTCGGTTCATCCAGTCATCAGCAACATCCACTCCGTTATAGCGAGTCAGCCTCTAGCTTCTCGCCATTTGCGTCTGCCAACTCCCTTCCGGATTGTTGA 1326 0.4389 MGTSNLRLFLFYLLSFCVMAAAKVVLIGNNTTLSFDDIEANFSPSVKGSGEYGALFLAEPLDACTELTNKAIQLPNDSSPFVLMIRGGCSFEDKVRVAQNAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILMKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRGSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLSSTPSSMSSSFVSSMRSSFASSSAIQIASQSPSASRNHSVASTPYMQPSLRSYRQSPSLSVSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYLSSHIPSPSNGSVSFLGSSSHQQHPLRYSESASSFSPFASANSLPDC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04218 441 CDD PA_C_RZF_like 13 163 IPR044744 -
Tsu01g04218 441 SUPERFAMILY RING/U-box 224 289 - -
Tsu01g04218 441 MobiDBLite consensus disorder prediction 326 382 - -
Tsu01g04218 441 Pfam Ring finger domain 234 277 IPR001841 -
Tsu01g04218 441 Gene3D - 17 153 - -
Tsu01g04218 441 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Tsu01g04218 441 Pfam PA domain 81 142 IPR003137 -
Tsu01g04218 441 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 377 - -
Tsu01g04218 441 SMART ring_2 235 276 IPR001841 -
Tsu01g04218 441 MobiDBLite consensus disorder prediction 420 441 - -
Tsu01g04218 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 282 IPR013083 -
Tsu01g04218 441 SUPERFAMILY PA domain 81 145 IPR046450 -
Tsu01g04218 441 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 377 - -
Tsu01g04218 441 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04218 Tsu-Chr1 50025235 50030098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04218 18 440 C3H Transcription Factor Family AT1G22670 48.276 1.69e-115 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04218 K15692 - gmx:100791248 636.336