Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04214 ATGGGTAAGGAAAAGGTTCATATCAACATTGTGGTCATTGGCCATGTCGACTCTGGAAAATCAACTACCACCGGTCACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTTAAGGCTGAACGTGAAAGAGGTATCACAATTGACATTGCATTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCTGGACATAGggatttcattaagaacatgaTTACTGGCACATCCCAAGCTGATTGTGCTGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAAGACGGACAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAGTATTCAAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCTTCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGTCAAGTCCGTGGAGATGCATCATGAAGCTCTCCAAGAGGCCCTTCCTGGTGACAATGTTGGATTTAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCAAAGGATGATCCAGCCAAGGAGGCTGCTAACTTTACATCTCAAGTGATCATCATGAATCACCCTGGCCAGATCGGAAATGGTTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACCAAGATTGACAGGCGTTCTGGTAAGGAAATTGAAAAGGAGCCCAAATTTTTGAAGAATGGTGATGCTGGTATTATTAAGATGGTTCCCACCAAGCCCATGGTTGTTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTCGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGGCTGTGCAGAAGAAGGAAGCCACTGGTGCTGGAGGTAAGGTAATCACCAAGTCAGCTTTGAAGAAGAAGTGA 1161 0.4384 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVQKKEATGAGGKVITKSALKKK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04214 386 PANTHER TRANSLATION FACTOR 1 212 - -
Tsu01g04214 386 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 228 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 262 365 IPR009001 -
Tsu01g04214 386 CDD EF1_alpha 9 212 - -
Tsu01g04214 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 212 IPR027417 -
Tsu01g04214 386 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Tsu01g04214 386 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 212 - -
Tsu01g04214 386 Gene3D - 1 229 IPR027417 -
Tsu01g04214 386 Pfam Elongation factor Tu GTP binding domain 6 202 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 CDD EF1_alpha_III 259 362 - -
Tsu01g04214 386 PANTHER TRANSLATION FACTOR 213 385 - -
Tsu01g04214 386 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 213 385 - -
Tsu01g04214 386 SUPERFAMILY Translation proteins 204 257 IPR009000 -
Tsu01g04214 386 Pfam Elongation factor Tu C-terminal domain 257 365 IPR004160 -
Tsu01g04214 386 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Tsu01g04214 386 Gene3D Translation factors 259 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04214 Tsu-Chr1 50000880 50002367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04214 1 385 Eukaryotic Initiation Factors Gene Family AT1G07930 81.865 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04214 K03231 - vvi:100244821 637.491