Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04210 atgccaacaacatcaacaacaacgtTTGGTGGTGTAGAAACTTCAAATGCAAACTCATCCAAACATACCCCCCGAGAATCTCGTGAACCTCCTCCTTTACTCTCTTCTTCTTACCCAATCACTCTTAAGTTTATGGACGTGGGATATCGATTAAAGATAGAGAACAAAAAAGGAAACGGAGGGTGCATCAAGAATTTCTTTACACCATCAACATCATCACCGTCTGATCAAAGATCAACGCAAGAGCGAATCATACTTAACGGGGTAACGGGTATAGCTTACCCAGGAGAGATCCTAGCCATTCTAGGTCCATCAGGAAGTGGAAAATCAACGCTCCTAAACTCACTAGCAGGAAGACTTCATGGAAACGGTCTCACAGGAACAATTCTCGCTAACTCATCAAAACTCAACAGAACGGTTCTCCGTCGAACAGGATTCGTTACACAAGACGATATTCTTTACCCTCATTTAACCGTTCGCGAGACGCTGATATTCTGCTCAATGCTTCGTCTCCCGAGAAAACTTCCTCGGGAAACGAAGATATCAGCAGCAGAATCAGCGATTGCCGAGCTTGGTTTAACTAAGTGTGAGAACACTATAATTGGTAACAGTTTCATTCGCGGTGTTTCTGGTGGAGAGAGGAAAAGAGTAAGTATTGCTCATGAGATGTTAGTAGATCCAGCGCTTTTGATCTTAGATGAACCTACATCTGGATTGGATTCAACGGCCGCGCATCGACTTGTGTCGACGCTTGGATCGTTAGCGAGGAAAGGGAAGACGGTGGTTACGTCGGTGCATCAGCCATCGAGTCGTGTATACCAGATGTTTGATAAAGTGATTGTGTTATCAGAAGGTCAGTGTATGTACTACGGGAAAGGAACCGACGCTATGAGATATTTTGAGTCGGTTGGATTCGCGCCATCATTTCCGGTAAATCCGGCGGATTTTCTGCTTGATCTTGCTAACGGTGTTTGCCATTCAGATGGTGTAAGTGAAAAAGATAGACCAAACATAAAGCAAAATCTAATTCATTCATACAACACAGTATTGGGTCCAAAGGTGAAAGCACTCTGCATGGACACAGCTAATGTTTCAACAAAAGACTCTAACCCTTTAAGAAACAACTCTTCAAAAGAACATAGATATAATAACAGATTCAGCATCTTTGATTGGTTTTACCAATTCAATATTCTGCTCCAAAGAAGcctcaaagaaagaaaatatgaatCATTCAACACACTAAGAGTTTTTCAAGTTGTTGCTGCTGCATTACTAGCTGGTTTAATGTGGTGGCATTCAGACTATAAGAACATTCAAGATAGACTTGGATTACTCTTCTTCATTTCAATCTTTTGGGGTGTATTCCCATCTTTCAACTCTGTTTTCGCATTCCCTCAAGAACGCGCAATCTTTGTTAAAGAAAGAGCTTCTGGTATGTACACATTATCATCCTATTTCATGGCTAGAATTGTTGGTGACTTACCAATGGAGCTTCTTCTTCCGACAGCTTTCCTCATCATTACCTATTGGATGGGTGGATTAAAGCCTGATTTGTTATCATTTCTCTTGACTCTATTAGTTGTTCTCGGATTCGTGCTTGTGTCCCAAGGTCTTGGACTTGCTTTAGGTGCTGCAATTATGGATGCTAAACAAGCTTCCACTGTTGCAGCAGTTACAATGCTAGCATTTGTTTTAACAGGTGGCTACTATGTCCATAAAGTTCCATCTTGTGTTGCTTGGATCAAATACATATCCACAACATTCTATAGTTACCGGCTTTTGACTCGAATTCAATATGGTGACGGAAAGAAAATTGCAAATCTATTAGGCTGCAATAAAGACGGTATTACTAGTGATGGAGCTAGTTGCAAATTTCTTGATGAAGATGTGGTGGGTCAAATTGGTGCAATGGGATGCATTGGAGTGTTGTTTTTCATGTTTGTGTTTTACAGATTAGTGGCTTATCTTTGTTTGAGGCGCATCAAGAGTTGA 1992 0.4026 MPTTSTTTFGGVETSNANSSKHTPRESREPPPLLSSSYPITLKFMDVGYRLKIENKKGNGGCIKNFFTPSTSSPSDQRSTQERIILNGVTGIAYPGEILAILGPSGSGKSTLLNSLAGRLHGNGLTGTILANSSKLNRTVLRRTGFVTQDDILYPHLTVRETLIFCSMLRLPRKLPRETKISAAESAIAELGLTKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPALLILDEPTSGLDSTAAHRLVSTLGSLARKGKTVVTSVHQPSSRVYQMFDKVIVLSEGQCMYYGKGTDAMRYFESVGFAPSFPVNPADFLLDLANGVCHSDGVSEKDRPNIKQNLIHSYNTVLGPKVKALCMDTANVSTKDSNPLRNNSSKEHRYNNRFSIFDWFYQFNILLQRSLKERKYESFNTLRVFQVVAAALLAGLMWWHSDYKNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELLLPTAFLIITYWMGGLKPDLLSFLLTLLVVLGFVLVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCVAWIKYISTTFYSYRLLTRIQYGDGKKIANLLGCNKDGITSDGASCKFLDEDVVGQIGAMGCIGVLFFMFVFYRLVAYLCLRRIKS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04210 663 Pfam ABC-2 type transporter 393 598 IPR013525 GO:0016020|GO:0140359
Tsu01g04210 663 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g04210 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 14 661 - -
Tsu01g04210 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 302 IPR027417 -
Tsu01g04210 663 Pfam ABC-2 type transporter 266 363 IPR043926 GO:0140359
Tsu01g04210 663 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g04210 663 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 309 IPR003439 GO:0005524
Tsu01g04210 663 Gene3D - 77 303 IPR027417 -
Tsu01g04210 663 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 14 661 - -
Tsu01g04210 663 SMART AAA_5 95 286 IPR003593 -
Tsu01g04210 663 Pfam ABC transporter 87 237 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04210 Tsu-Chr1 49966607 49974884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04210 74 408 Calmodulin-binding Proteins AT2G36910 25.135 2.84e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04210 K05681 - gmx:100812127 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04210 01 49966607 49974884 Tsu01g04210 01 49966607 49974884 ECH