Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04207 ATGCAGAAACAAACATTTGGATCATCAAAAGCATCATCAAAATGCACTGCTGTGTTACCCTATCAAACCCCAAGATTAAGGGATCATTACCTTCTTGGGAAGAAACTAGGACAAGGACAATTTGGTACAACATATCTATGTACACACAAAGCCAGTGGAAAACTCTATGCATGCAAATCAATTCCAAAGAGGAAGCTTTTATGTCAAGAAGATTATGATGATGTGTGGAGAGAGATTCAGATCATGCATCATTTATCTGAACATCCAAATGTTGTTCAGATACAAGGAACCTACGAGGATTCTGTGTTTGTGCATTTGGTTATGGAATTGTGTGCTGGTGGTGAGCTTTTTGATAGGATTATTCAAAAGGGTCATTATAGTGAAAGAGAAGCTACAAAATTGATTAAGACAATTGTTGGTGTTGTTGAAGCTTGTCATTCTCTTGGTGTTATGCATAGGGATCTTAAGCCTGAGAATTTCTTGTTTGATACTCCTGGTGAAGATGCTCAAATGAAAGCTACAGATTTTGGTCTCTCTGTGTTCTACAAACCAGGACAAACTTTTCATGACGTAGTTGGAAGTCCCTACTATGTTGCACCTGAGGTATTGTGTAAAATATATGGACCAGAAGTCGATGTTTGGAGTGCTGGTGTTATCCTATACATCTTACTGAGCGGTGTTCCACCTTTTTGGGCTGAAACCGAATCGGGAATTTTTAGACAGATTTTAAATGGAGATCTTGATTTTGTGTCGGATCCATGGCCAACGATCTCAGACAGTGCTAAAGATTTGGTAAAACAGATGTTGGATAGGGACCCTAAGAAAAGAATCACTGCTCATGAAGTCTTATGTCACCCTTGGATTGTTGATGATACAGTTGCACCTGACCAGCCTTTAGATTCTGCTGTTTTGACACGGCTAAAGCATTTCTCGGCAATGAATAAACTTAAGAAGATGGCACTACGCgtCATAGCAGAAAGACTTTCGGAGGAAGAAATTGGCGGATTAAAAGAGTTATTCAAAATGATCGACACAGACAACAGTGGGACAATAACTTTTGAGGAACTCAAGGATGGTCTAAAAAGAGTCGGCTCTGATCTCATGGAATCTGAAATTAAATCCCTTATGGACGCGGCTGATATCGACAATAATGGAACAATAGACTACGGTGAATTTCTTGCTGCTACACTGCACTTGAATAAGATGGAAAGAGAAGAGAATTTGGTTGCAGCTTTTGGGTATTTTGATAAAGATGGAAGTGGTTACATCACCATTGACGAGCTTCAACAGGCTTGTAAAGACTTTGGCCTTGGCGAAGTACATCTAGATGACATAATCAAAGAGATTGATCAAGATAATgATGGAAGAATCGATTATGCGGAGTTTGCGGCGATGATGAAAAAAGGTGATAGAGATGATATGGTTGGTAGAACCAGAACCATGAAAgggaatttgaatttcaatattGCAGATGCATTTGGAGTGAAAGACTCTTCTTGA 1500 0.388 MQKQTFGSSKASSKCTAVLPYQTPRLRDHYLLGKKLGQGQFGTTYLCTHKASGKLYACKSIPKRKLLCQEDYDDVWREIQIMHHLSEHPNVVQIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREATKLIKTIVGVVEACHSLGVMHRDLKPENFLFDTPGEDAQMKATDFGLSVFYKPGQTFHDVVGSPYYVAPEVLCKIYGPEVDVWSAGVILYILLSGVPPFWAETESGIFRQILNGDLDFVSDPWPTISDSAKDLVKQMLDRDPKKRITAHEVLCHPWIVDDTVAPDQPLDSAVLTRLKHFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKDGLKRVGSDLMESEIKSLMDAADIDNNGTIDYGEFLAATLHLNKMEREENLVAAFGYFDKDGSGYITIDELQQACKDFGLGEVHLDDIIKEIDQDNDGRIDYAEFAAMMKKGDRDDMVGRTRTMKGNLNFNIADAFGVKDSS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04207 499 SUPERFAMILY EF-hand 327 467 IPR011992 -
Tsu01g04207 499 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Tsu01g04207 499 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Tsu01g04207 499 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Tsu01g04207 499 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04207 499 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Tsu01g04207 499 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04207 499 CDD EFh 408 467 IPR002048 GO:0005509
Tsu01g04207 499 SMART efh_1 407 435 IPR002048 GO:0005509
Tsu01g04207 499 SMART efh_1 441 469 IPR002048 GO:0005509
Tsu01g04207 499 SMART efh_1 335 363 IPR002048 GO:0005509
Tsu01g04207 499 SMART efh_1 371 399 IPR002048 GO:0005509
Tsu01g04207 499 ProSiteProfiles EF-hand calcium-binding domain profile. 441 472 IPR002048 GO:0005509
Tsu01g04207 499 CDD STKc_CAMK 29 287 - -
Tsu01g04207 499 Gene3D - 299 473 - -
Tsu01g04207 499 Gene3D Phosphorylase Kinase; domain 1 31 115 - -
Tsu01g04207 499 Pfam Protein kinase domain 32 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04207 499 Gene3D Transferase(Phosphotransferase) domain 1 116 298 - -
Tsu01g04207 499 SUPERFAMILY Protein kinase-like (PK-like) 16 309 IPR011009 -
Tsu01g04207 499 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Tsu01g04207 499 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 480 - -
Tsu01g04207 499 PANTHER BNAA09G05220D PROTEIN 17 480 - -
Tsu01g04207 499 CDD EFh 336 395 IPR002048 GO:0005509
Tsu01g04207 499 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Tsu01g04207 499 Pfam EF-hand domain pair 407 467 IPR002048 GO:0005509
Tsu01g04207 499 Pfam EF-hand domain pair 336 396 IPR002048 GO:0005509
Tsu01g04207 499 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Tsu01g04207 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Tsu01g04207 499 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04207 Tsu-Chr1 49917145 49920392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04207 16 499 EF-hand Containing Proteins AT4G09570 83.058 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g04207 Pkinase 2.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04207 K13412 - gmx:547887 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04207 01 49917145 49920392 Tsu01g04207 01 49917145 49920392 ECH