Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04199 atgggaGATTCCTACTTTGCTAACCAAATTAGTGTTGCCTCTGAACAAAATGAGGATAGTGCTTGTCTTTCAGCAATGGTAGTTGTCACTAATCTTGTTTATCCAGCAGTGTTAAATGCTGCTATTGATCTCAATCTGTTTGAGATTATAGCTAAGGCAACTCCACCCGGTGCTTTCATGTCACCATCTGAAATTGCTTCTAAATTGCCGCCATCAACCCAACACTCGGACTTGTCTAACAGGCTCGACCGAATGTTGCGCTTGCTTGCTAGTTATTCCGTTCTTACTTCTACCACTAGACCCACCGAGCATGGTAGCACTGAGAGAGTTTACGGACTCTCAATGGTCGGAAAATACCTTGTCCCCGATGAAAGTAGAGGATCCTTGGCTTCATTCACTACATTTATGTGTTATCCTGCATTGTTACAAGTTTGgatGAACTTTAAGGAAGCAGTGGTTGATGAAGACATTGATTTGTTCAAGAACATTCATGGAGTGACAAAGTATGAATACATGGGAAATGATAAGAAAATGAAccaaatatttaataaatcaatGGTCGATGTTTGTGCAACAGAGATGAAAAGAATGCTTGAAATATACAATGGATTCGAGGGAATATCAACATTAGTTGATGTTGGTGGTGGAAGTGGCCAAAATCTCAAAATGATTATATCTAAGTTCCCATTAATTAAGGGAATTAATTTTGATCTGCCTCAGGTGATTGAAAATGCACCTCTACTTCTAGGGATTGAGCATGTTGGAGGAGATATGTATGCAAGTGTTCCACAGGGTGATGCCATGATACTAAAGGCTGTGTGTCACAATTGGTCAGATGAAAAGTGCATAGAATTTTTAAGCAATTGTCACAAAGCTCTATCACCAAATGGAAAAGTGATTGTTGTGGAATTTATATTGCCAGAAGAACCAACAGAAACCGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTAATGTTTATCACAGTTGGTGGAAGGGAAAGAACTGAGAAACAATGGGAGAATTTGAGCAAACTCTCTGGATTTTCCAGATTTCAAGTGGCTTGTCGTGCCTTTTCAAGTTTAGGAATCATGGAATTTTATAAATGA 1110 0.3793 MGDSYFANQISVASEQNEDSACLSAMVVVTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPPSTQHSDLSNRLDRMLRLLASYSVLTSTTRPTEHGSTERVYGLSMVGKYLVPDESRGSLASFTTFMCYPALLQVWMNFKEAVVDEDIDLFKNIHGVTKYEYMGNDKKMNQIFNKSMVDVCATEMKRMLEIYNGFEGISTLVDVGGGSGQNLKMIISKFPLIKGINFDLPQVIENAPLLLGIEHVGGDMYASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIVVEFILPEEPTETEESKLVSTLDNLMFITVGGRERTEKQWENLSKLSGFSRFQVACRAFSSLGIMEFYK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04199 369 Pfam O-methyltransferase domain 145 350 IPR001077 GO:0008171
Tsu01g04199 369 Gene3D Vaccinia Virus protein VP39 179 358 IPR029063 -
Tsu01g04199 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 369 IPR016461 GO:0008168
Tsu01g04199 369 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Tsu01g04199 369 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
Tsu01g04199 369 PIRSF O-mtase 3 369 IPR016461 GO:0008168
Tsu01g04199 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 364 IPR029063 -
Tsu01g04199 369 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 369 - -
Tsu01g04199 369 PANTHER O-METHYLTRANSFERASE 1 369 IPR016461 GO:0008168
Tsu01g04199 369 Gene3D - 33 197 IPR036388 -
Tsu01g04199 369 CDD AdoMet_MTases 209 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04199 Tsu-Chr1 49840962 49842637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04199 18 369 Monolignol Biosynthesis Gene Families AT5G54160 47.309 7.45e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04199 - - ag:AAB48059 662.914