Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04198 ATGGGAGATTCCTATTTTACTAAAGAGGGTAACCAAATTAGTGCTTCCTCAGAACAAACTGAGGACAGTGCATGTCTTTCAGCAATGTTAGTTACAACTAATCTTGTTTATTCAGCAGTGTTAAGTGCTGCTATTGATCTCAATTTATTTGAGATCATAGCTAAGGCAACACCACCCGGTGCTTTCATGTCACCATCCGAAATTGCTTCTAAGTTGCCACAATCAACCCAACACTCGGACTTGTCTAATAGACTTGACCGAATGTTGCGTTTGCTTGCTAGTTATTCCATTCTTACATCTTCTACTCGAACCACCGAGAATGGTACTGAGAGAATTTACGGTCTCACGATGGTAGGAAAATATTTTGTCCCTGATGAAAGTGGAGGCTCCTTGGCATCAATCACCTCATTTATATGCTATCCTGCATTGTTACAAGTTTGGATGAACTTTAAGGAAGCGGTGGTTGATGAAGACATTGATTTGTTCAAAAACACTCATGGAGTGACAAAGTATGAATACATGGGAAAGGATAAGAAAATGAACCAAATATTTAACAAATCAATGGTTGATGTTTGTGCAATAGAGATGAAAAGAATGCTTGAAATATACTCTGGATTTGAAGGAATATCAACATTGGTTGATGTTGGTGGTGGAAGTGGACAAAATCTCAAAATGATAATATCTAAGTATCCATCAATTAAGggaattaattttgatttgccTCAGGTGGTTGAAAATGCACCACCACTTTTAGGGATTCAGCATGTTGGAGGAGATATGTTTGCAAGCATTCCACATGGTGATGCCATGATATTAAAGGGTGTATGTCATAATTGGTCAGATGAAAAATGCACAGAAATTTTAAGCAAATGTCACAAAGCTCTGTCACCAAATGGGAAGGTGATTCTAGTGGAGTTCATATTGCAAGAAGAACCAACATCAACTAAAGAATCTAAATTTGTTTCAACTCTTGATAATCTCATGTTTATCACAGTTGGTGGAAGAGAAAGAACCGAGAAACAATATGAGAAATTGGGCAAACTTTCTGgattttccaaatttcaagtTGCTTGCCGTGCTTTCTCCAGTTTAGGAGTGATGGAATTTTATAACTAA 1116 0.3629 MGDSYFTKEGNQISASSEQTEDSACLSAMLVTTNLVYSAVLSAAIDLNLFEIIAKATPPGAFMSPSEIASKLPQSTQHSDLSNRLDRMLRLLASYSILTSSTRTTENGTERIYGLTMVGKYFVPDESGGSLASITSFICYPALLQVWMNFKEAVVDEDIDLFKNTHGVTKYEYMGKDKKMNQIFNKSMVDVCAIEMKRMLEIYSGFEGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVVENAPPLLGIQHVGGDMFASIPHGDAMILKGVCHNWSDEKCTEILSKCHKALSPNGKVILVEFILQEEPTSTKESKFVSTLDNLMFITVGGRERTEKQYEKLGKLSGFSKFQVACRAFSSLGVMEFYN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04198 371 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Tsu01g04198 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 371 IPR016461 GO:0008168
Tsu01g04198 371 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 370 - -
Tsu01g04198 371 PIRSF O-mtase 6 371 IPR016461 GO:0008168
Tsu01g04198 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 368 IPR029063 -
Tsu01g04198 371 Gene3D Vaccinia Virus protein VP39 123 371 IPR029063 -
Tsu01g04198 371 CDD AdoMet_MTases 211 308 - -
Tsu01g04198 371 Gene3D - 6 122 IPR036388 -
Tsu01g04198 371 PANTHER O-METHYLTRANSFERASE 1 370 IPR016461 GO:0008168
Tsu01g04198 371 SUPERFAMILY "Winged helix" DNA-binding domain 21 126 IPR036390 -
Tsu01g04198 371 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04198 Tsu-Chr1 49835808 49838431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04198 20 361 Monolignol Biosynthesis Gene Families AT5G54160 48.256 1.79e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04198 - - ag:AAB48059 647.506