Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g04197 | atgggaGACTCTTACATTACTAAGGAGGAGAATAACCAATTTAGTGCTCCCTCATACCAAACTGAGGACAGTGCTTGTCTTTCAGCAATGGTTCTTACCACTAATCTTGTTTATCCAGCAGTGTTAAATGCGGCTATTGATCTCAATTTATTTGAGATCATAGCTAAGGCAACACCACCAGGTGCATTCATGTCACCATCTGAAATTGCTTCTAAATTGCCGCCATCAACCCAACACTCGGACTTGCCTAACAGGCTTGACCGGATGTTGCGTTTGCTTGCTAGTTATTCCGTTCTCACTTCTACCACTCGGCCTACTGAGGATGGTAGCACCGAGAGAGTTTATGGACTCTCGATGGTAGGAAAATACCTTGTCCCCGATGAAAGTCGTGGCTACTTAGCTTCATTCACCACATTTTTGTGTTATCCTGCATTGTTACAAGTTTGGATGAACTTTAAGGAAGCAGTGGTTGATGAAGACATTGATTTGTTCAAGAACACTCATGGAGTGACAAAGTATGAATACATGGGAAAGGATAAAAAAATGAACCAAATATTTAACAAATCAATGGTTGATGTTTGTGCAACAGAGATGAAAAGAATGCTTGAAATATACACTGGATTTCAAGGAATATCAACATTAGTTGATGTTGGTGGTGGAAGTGGACAAAATCTCAAAATGATTATATCTAAGTATCCATCAATTAAGggaattaattttgatttgccTCAGGTTATTGAAAATGCACCACCACTTCCAGggATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATGATCCTAAAGGCTGTATGTCATAATTGGTCGGATGAAAAATGCATAGAATTTCTAAGTAATTGTCACAAAGCTCTGTCACCAAATGGAAAAGTGATTCTTGTGGAGTTCATATTACCAGAAGAACCAACAGAAACTGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTCATCACAGTTGGTGGAAGAGAAAGAACTGAGAAACAATATGAAAAATTGGGTAAACTATCTGgattttccaaatttcaagtTGCTTGCCGTGCTTTCTCCAGTTTAGGAGTTATGGAATTTTATAACTAG | 1122 | 0.3717 | MGDSYITKEENNQFSAPSYQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPPSTQHSDLPNRLDRMLRLLASYSVLTSTTRPTEDGSTERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNTHGVTKYEYMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFQGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVILVEFILPEEPTETEESKLVSTLDNLMFITVGGRERTEKQYEKLGKLSGFSKFQVACRAFSSLGVMEFYN | 373 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04197 | 373 | Pfam | O-methyltransferase domain | 149 | 354 | IPR001077 | GO:0008171 | |
| Tsu01g04197 | 373 | PANTHER | O-METHYLTRANSFERASE | 1 | 372 | IPR016461 | GO:0008168 | |
| Tsu01g04197 | 373 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 30 | 373 | IPR016461 | GO:0008168 | |
| Tsu01g04197 | 373 | Pfam | Dimerisation domain | 41 | 94 | IPR012967 | GO:0046983 | |
| Tsu01g04197 | 373 | PANTHER | CAFFEIC ACID O-METHYLTRANSFERASE | 1 | 372 | - | - | |
| Tsu01g04197 | 373 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 131 | 370 | IPR029063 | - | |
| Tsu01g04197 | 373 | PIRSF | O-mtase | 6 | 373 | IPR016461 | GO:0008168 | |
| Tsu01g04197 | 373 | SUPERFAMILY | "Winged helix" DNA-binding domain | 22 | 128 | IPR036390 | - | |
| Tsu01g04197 | 373 | Gene3D | Vaccinia Virus protein VP39 | 183 | 362 | IPR029063 | - | |
| Tsu01g04197 | 373 | Gene3D | - | 37 | 201 | IPR036388 | - | |
| Tsu01g04197 | 373 | CDD | AdoMet_MTases | 213 | 310 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g04197 | Tsu-Chr1 | 49829677 | 49831860 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g04197 | 17 | 363 | Monolignol Biosynthesis Gene Families | AT5G54160 | 49.138 | 3.23e-115 | 338 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g04197 | - | - | ag:AAB48059 | 691.419 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu01g04197 | 01 | 49829677 | 49831860 | Tsu01g04197 | 01 | 49829677 | 49831860 | ECH |