Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04194 ATGaatatgaacatgttcaggtatGAATATACAACAACTTTCCTACTCTTGTTTTTGTTATGTCCTATGGTTTTGTCTTTGCTGtctcaaaaccaaacaaataccATGATCAATCTTTCCAATCTTCTTAATCACTCTGATTGGAATCCCAACAAAAACTCCAATCCATGTTCATGGAAAGGTGTCACTTGTGACAATACAAGTTCATCTGTCATCAAAATTGTCCTACATGgttcttctctttcttcacAATCTCTTCCAGTTCTTTGCAAAATTGAAACTTTGCAACACCTTGATGTTTCTAATAACCATCTCAACTCTATCCCAGATGGGTTTATTTCTGCATGTGGAAAAATTCAGAATTTAAAGCTTTTAAATTTCAGTGGAAATTTGTTAAGTGGTGTTTTGCCTACTTTTAATGGTTTTCATGGATTGGAATCACTTGACATGTCTTTAAATAGTTTGAGTGGAAGCATTGATATGCAGTTAGATGGATTGGTTAGTCTCAAGTTTCTTAGTCTTGGTTACAATAACTTCAATGGGAAACTTCCTACTAATTTGGGAAGGTCCATGGTTTTGGAGCAGCTTGTGCTTTCAAACAATGTTTTTGAAGGAACTATCCCTGATCAAATTTTGAGCTACAAAAATTTGACTGTGATTGATTTTACGGCAAATGAGCTTTCAGGGTCTATTCCTCTAAATATTGGAAATCTTTCCAAATTGAAAACTCTGAGTCTTTCCTCTAATAGACTACTAGGTGGTAAAATCCCAATGTCAATCGTGAATATCACAACTCTAGTAAGATTTGCAGCTAATTCAAATAAGTTTTCTGGTGCTATTCCTCTAGGAAttacaaaatttcttttgagtTTGGATCTTAGTTATAATAGTTTATCCGAGTCTATTCCAGAAGAGCTTTTATCTCCATCACAGTTAGTGCTTGTAGATTTGTCCCATAACAAGTTAACAGGTCATGTGCCTGCAAATATTTCAACTAGTTTAGTCAGGTTGAGATTGGGGGGAAATTTGTTGACAGGAGAGGTTCCTTCAGATACTTGCAAAGCCGTTCGTGACAGCCAATTGACATACATGGAACTGGACAACAATCAGTTGAGAGGTTTGATACCTCCTGGATTAGGTTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTTATAATCAATTGACTGGTGCATTGCCACCGGAACTTGGTAATCTTAGCCATCTTCAAGTCTTGCAGCTTCAAACAAACAAGCTCAATAGTACTATCCCTATTCAAATTTCCCAACTTCAACAGTTGTCTACCTTGAATTTGAGCTATAATTCTTTTGATGGACCAATTCCATCTGATATGCCAATCAACCTTACACTCCTTAACTTGCAAGGGAACAATCTCAACGGGTCTATACCGTCGTCCATTGGAAACTTGCAAAAGCTTTTAGATGTCCAACTTGGAGAAAACCAGCTAAGCGGTGATATTCCAAAAATGCCTTTGAGTCTACAGATTGGATTGAATCTCAGTAGCAATCACTTTAGTGGAGTTATTCCTAGTAGTTTTGGTGATTTGTTTAACCTAGAAATTTTGGATCTCTCAAATAACAGATTCTCCGGTGAAATTCCTGTGTCTTTAACTAAAATGTCAGCATTGACACAGTTGCAACTATCAAACAATAATCTAACAGGTTTCCTTCCATCATTTGCTCCATACGTTACTGTTGATATAGAAGGAAACAATGTCAAGAATAGTACTAATGTACCAGTTAACAATTCTCCAAGTGCAAAAACGAAAGGGAAATCTGTTGTTGCCGCTGTTCTTATTGCAATTGCTGCTGCTATTTTTGTGGTTGCCATGGTCACCCTGCTGGTTGTGTCGATCTCACGACACTATTGCAAGGTTAACGATGAACGAGTACAGTCAAGTGAAGGTGAAAATCTTGACCTTCCTCAGGTCATCCAGAGTAATTTGTCAACTCCAAATGGAATCCACAGATCAAACATTGATCTCTCCAAGGCCATGGAAGCTGTCGCCGAACCGTCAAATGTAACTCTAAAAACCAAGTTTTCAACTTACTATAAAGCTGTTATGCCATCTGGCTCAATCTATTTTGCCAAGAAGCTGAACTGGTGTGACAAGATATTTCCAGTGAGTAGTGTCGATAAATTTGGGAAAGAGTTGGATGCATTGGCAAAGTTGAACAATTCAAATGTGATGATTCCTCTAGGCTATATCGTGTCCACTAACAATGCTTATGTATTATACGAGTTTGTGTCGAACGGCTCTCTCTTCGATGTGCTTCACGGGAACATGGAAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGTGTGGCTCAAGGTATCTCTTTTCTGCATGGATTTGCATCTGGTCCAATACTTCTCCTTGATTTATCAAGTAAAAGTATTATGCTGAAATCACTCAAGGAGCCTTTAGTCGGCGATATTGAACACTACAAGGTGATTGATCCTTCAAAGAGTACCGGGAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTACATTCCTCCAGAGTATGCATACACAATGAGAGTAACAGTGGCAGGAAATGTGTATAGCTTTGGGGTCATTCTACTGGAATTGCTAACAGGCAAATCTGCAGTGACCGAGGGAACTGAATTGGTGAAGTGGGTTTTGCGTAATTCAAGAAATCAAGATCACATTCTTGATCCTAATGTTAGTAGAACATCACAGGCTGTTAGAAACCAAATGCTTGCAATTCTGGAGATCGCTCTTGTTTGTGTTAGCACATCTCCTGATGCAAGACCAAAGATGAAGACTGTGCTAAGAATGTTGCTGAATGCCAGATAA 2850 0.3744 MNMNMFRYEYTTTFLLLFLLCPMVLSLLSQNQTNTMINLSNLLNHSDWNPNKNSNPCSWKGVTCDNTSSSVIKIVLHGSSLSSQSLPVLCKIETLQHLDVSNNHLNSIPDGFISACGKIQNLKLLNFSGNLLSGVLPTFNGFHGLESLDMSLNSLSGSIDMQLDGLVSLKFLSLGYNNFNGKLPTNLGRSMVLEQLVLSNNVFEGTIPDQILSYKNLTVIDFTANELSGSIPLNIGNLSKLKTLSLSSNRLLGGKIPMSIVNITTLVRFAANSNKFSGAIPLGITKFLLSLDLSYNSLSESIPEELLSPSQLVLVDLSHNKLTGHVPANISTSLVRLRLGGNLLTGEVPSDTCKAVRDSQLTYMELDNNQLRGLIPPGLGSCKKLALLNLAYNQLTGALPPELGNLSHLQVLQLQTNKLNSTIPIQISQLQQLSTLNLSYNSFDGPIPSDMPINLTLLNLQGNNLNGSIPSSIGNLQKLLDVQLGENQLSGDIPKMPLSLQIGLNLSSNHFSGVIPSSFGDLFNLEILDLSNNRFSGEIPVSLTKMSALTQLQLSNNNLTGFLPSFAPYVTVDIEGNNVKNSTNVPVNNSPSAKTKGKSVVAAVLIAIAAAIFVVAMVTLLVVSISRHYCKVNDERVQSSEGENLDLPQVIQSNLSTPNGIHRSNIDLSKAMEAVAEPSNVTLKTKFSTYYKAVMPSGSIYFAKKLNWCDKIFPVSSVDKFGKELDALAKLNNSNVMIPLGYIVSTNNAYVLYEFVSNGSLFDVLHGNMENSLDWASRYSIAVGVAQGISFLHGFASGPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTVAGNVYSFGVILLELLTGKSAVTEGTELVKWVLRNSRNQDHILDPNVSRTSQAVRNQMLAILEIALVCVSTSPDARPKMKTVLRMLLNAR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04194 949 Gene3D Phosphorylase Kinase; domain 1 649 755 - -
Tsu01g04194 949 SMART LRR_typ_2 522 545 IPR003591 -
Tsu01g04194 949 SMART LRR_typ_2 546 568 IPR003591 -
Tsu01g04194 949 SMART LRR_typ_2 119 141 IPR003591 -
Tsu01g04194 949 SMART LRR_typ_2 92 115 IPR003591 -
Tsu01g04194 949 SMART LRR_typ_2 166 190 IPR003591 -
Tsu01g04194 949 SMART LRR_typ_2 406 430 IPR003591 -
Tsu01g04194 949 SMART LRR_typ_2 285 309 IPR003591 -
Tsu01g04194 949 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 946 - -
Tsu01g04194 949 Gene3D Ribonuclease Inhibitor 453 500 IPR032675 -
Tsu01g04194 949 Gene3D Ribonuclease Inhibitor 501 583 IPR032675 -
Tsu01g04194 949 PANTHER F12K21.25 12 946 - -
Tsu01g04194 949 Pfam Leucine rich repeat 504 559 IPR001611 GO:0005515
Tsu01g04194 949 Gene3D Transferase(Phosphotransferase) domain 1 756 949 - -
Tsu01g04194 949 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Tsu01g04194 949 SUPERFAMILY Protein kinase-like (PK-like) 687 945 IPR011009 -
Tsu01g04194 949 Gene3D Ribonuclease Inhibitor 25 85 IPR032675 -
Tsu01g04194 949 Gene3D Ribonuclease Inhibitor 86 452 IPR032675 -
Tsu01g04194 949 Pfam Protein tyrosine and serine/threonine kinase 718 945 IPR001245 GO:0004672|GO:0006468
Tsu01g04194 949 SUPERFAMILY RNI-like 290 565 - -
Tsu01g04194 949 ProSiteProfiles Protein kinase domain profile. 676 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04194 949 SUPERFAMILY L domain-like 54 352 - -
Tsu01g04194 949 Pfam Leucine rich repeat N-terminal domain 38 65 IPR013210 -
Tsu01g04194 949 Pfam Leucine Rich Repeat 95 113 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04194 Tsu-Chr1 49811225 49814955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04194 145 949 Receptor kinase-like Gene Family AT2G41820 38.407 2.76e-142 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g04194 PK_Tyr_Ser-Thr 2.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04194 - - mtr:MTR_1g096260 1152.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04194 01 49811225 49814955 Tsu01g04194 01 49811225 49814955 ECH