Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04190 ATGAATCCGACAGGAAGTTTGTGTGTTAACAACTGGGGAAGGTCCTCTTCCTTGGTCACTCCTGGGAATGGATTGCAGACAAATTTGTCCTTGGATCCATCCTCTTTCTTTGGGGTCGGTATTGAAACGCCTTTCAAAGAAATCAACCAACTCTCTCACACTCGGTGTGTGATTCCAGGTGAATCTAAAATAGATGTTAAGGTCACTGATCAGGAAACCAGTAAACTCCAAGATTGGGATCCCAGTGCTATGTTGAATAACCTTTCGTTTCTGGAAGAAAAGATTCATCAGCTCCAGGATGTAGTGCATGTGATTGTTAATAAGAAGTGTCAGCCTTTCGAACAACCTCGTGAACTCGTAACTCAGGAACAGCAACTCATCACAGCTGATCTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGCAGTCTTCTCCCTTCTGTTAGGAACACTGTTGCAAACACAAGTCCGTTGATTGGACAGCTTAGCCAGCTTCGAGGGATTAACCTTCCTTTTGGAACAGGCACAAGTAGTGGTATTCAGCCACAGAATAATTGTGGAAACAAATTGTTTGATCATTCAATTCAGAATGATGTACCTAATAATTGTGAAATGGAGCAAAACCATAATATGGAAGAACACGAACATAAAGACGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCATACGAGATTTTACAactagaaaaagaagaaatccttGCACCTCACACACATTTCTGTACGATATGTGGCAAAGGGTTCAAGAGGGACGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACTCCAGCAGCCCTTGCAAAACCACATAAAGAAACCGGGTCCGAACCAAAGCTTATCAAGAGGTATTCGTGCCCTTACGGTGGCTGCAAACGTAACAAGGATCACAAGAAAtttcagcctctgaagactATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGACAAGAGTTACACTTGCAGCAGATGCCACACGAAAAAGTTTTCAGTCATTGCAGATCTCAAAACTCATGAAAAACACTGTGGCAAGGATAAGTGGCTCTGTTCATGCGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACATATTGCTCTATTCCAAGGCCATACCCCGGCTATTCCTTTGGAAGAAAACAAAGGACTTGCCGAGCCACCTGATCGATGCGACACCAAAGAAAATAGCACTATGGTAGGTAGCATGAACTTCTGTTTTGGATCAAATCCTGCATGTGAAAATGCAGTTGATAACATCATGGATGTGAAAGGTAATATTGATGATCCTATCAATTACTTCTCATCTCTGAACTTCGAAGGCTGTAACTTTGGAGGGTTTAATGAATTCCCACAACCTCCATTCGAAGATGCAGATAGCTCTTTCTCTTTTCTCATGTCGGGATCATTTAATTATGCTCCTAAGTCTGGTGGTGAATCATGTTCTGACAATCTGTAA 1509 0.4089 MNPTGSLCVNNWGRSSSLVTPGNGLQTNLSLDPSSFFGVGIETPFKEINQLSHTRCVIPGESKIDVKVTDQETSKLQDWDPSAMLNNLSFLEEKIHQLQDVVHVIVNKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGSLLPSVRNTVANTSPLIGQLSQLRGINLPFGTGTSSGIQPQNNCGNKLFDHSIQNDVPNNCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEENKGLAEPPDRCDTKENSTMVGSMNFCFGSNPACENAVDNIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFPQPPFEDADSSFSFLMSGSFNYAPKSGGESCSDNL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04190 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 32 486 IPR044300 GO:0010044|GO:0010447
Tsu01g04190 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
Tsu01g04190 502 Gene3D Classic Zinc Finger 234 303 - -
Tsu01g04190 502 SUPERFAMILY beta-beta-alpha zinc fingers 248 275 IPR036236 -
Tsu01g04190 502 SMART c2h2final6 250 272 IPR013087 -
Tsu01g04190 502 SMART c2h2final6 299 332 IPR013087 -
Tsu01g04190 502 SMART c2h2final6 337 359 IPR013087 -
Tsu01g04190 502 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Tsu01g04190 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 32 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04190 Tsu-Chr1 49786042 49788717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04190 218 500 C2H2 Transcription Factor Family AT1G34370 71.280 2.53e-142 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04190 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04190 - - gmx:100170687 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04190 01 49786042 49788717 Tsu01g04190 01 49786042 49788717 ECH