Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04188 ATGCTAAGAAAAAACACTCTCAACATTGAAGATTCAAATGGTCTTCCATTAATTCATTTACTTCTCACAACAGCTACTTCAGTTGATGAAAACAACTTCGATTCATCGCTCGAAAACCTAACCGATCTTTACCAAATTGTTTCATTAACTGGCGATTCAGTTCAACGAGTTGTGGCCTATTTCACCGATGGTTTAACTGCGAAACTCCTCACAAAAAAATCACCATTTTACGAAATGTTGATGGAAGAACCAACAATCGACGAAGAGTTTCTCGCATTCACAGATCTCTATAGAGTCTCACCGTATTATCAATTCGCTCATTTCACCGCGAATCAAGTTATCTTAGAAGCTTtcgaaaaagaagaagagaaaaataaccGTTCGATACATGTCATTGATTTCGATGTTTCATACGGTTTTCAATGGCCTTCATTGATTCAATCTCTTTCGGAGAAAGCTACAAGCGGAAACAAGATCTCTCTCAGAATAACCGGATTCGGTAAGAATTTAAAAGAACTTCAAGAAACTGAATCTAGGTTAGTTAGTTTTGCAAAAAGTTTCGGTAACATTGTTTTCGAGTTTCAAGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAGAGTATTGAGAGATTAAGAATTGAGAAGAAAGTTTTTGGTAAAGAGATTAAGACTATGCTTAATAActatgatgttgatgatggttttgGTGTTGAATGTgctaaatatgaaaaaatggaAACATGGAAAAGTAGAATGGAGAATCATGGATTTATTGGTATGAAAATGAGTTCGAAGTGTTTAATACAAGCTAAATTGTTACTTAAGATGAGGACTAATTATTGTCCACTTCAATTCGAGGAAGAAAGCGGTGGCGGCGGcggtggaggtggtggtggtttCAGGGTTTCTGAAAGAGATGATGGAAAAGCTATTTCTTTAGGATGGCAAAATAGGTTTTTGCTAACAGTGTCAGCATGGCAATcactttga 996 0.3253 MLRKNTLNIEDSNGLPLIHLLLTTATSVDENNFDSSLENLTDLYQIVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQVILEAFEKEEEKNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSGNKISLRITGFGKNLKELQETESRLVSFAKSFGNIVFEFQAMFDSLDDCLPLESIERLRIEKKVFGKEIKTMLNNYDVDDGFGVECAKYEKMETWKSRMENHGFIGMKMSSKCLIQAKLLLKMRTNYCPLQFEEESGGGGGGGGGGFRVSERDDGKAISLGWQNRFLLTVSAWQSL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04188 331 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 194 329 IPR005202 -
Tsu01g04188 331 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 196 IPR005202 -
Tsu01g04188 331 ProSiteProfiles GRAS family profile. 8 329 IPR005202 -
Tsu01g04188 331 PANTHER OSJNBA0084A10.13 PROTEIN 194 329 - -
Tsu01g04188 331 PANTHER OSJNBA0084A10.13 PROTEIN 8 196 - -
Tsu01g04188 331 Pfam GRAS domain family 17 196 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04188 Tsu-Chr1 49772803 49774032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04188 182 328 GRAS Transcription Factor Family AT3G54220 30.405 3.41e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu01g04188 GRAS 5.1e-46 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04188 - - gmx:100809458 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04188 01 49772803 49774032 Tsu01g04188 01 49772803 49774032 ECH