Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04185 ATGTCTGGCAATTCAAGTTGCACCGTTTACATAGGCAATCTGGATGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATTCCTAAAGATAAGGAATCTGAGAAACCAAAAGGCTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGATTATGCCGTCAAACTTTTCTCTGGCCTTGTAACACTGTACAAACGAACACTGAAGTTTGCGATATCTGGAAGGGACAAAAATACCCCTAAtagttctacagctactacacCCACATCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAATAAATAGTTCAGAAAATTTTCAGCATTCCACTAGGCAATCAATACCTGACCGATTCTCAGATCATGCAGTAAATTATTCACAAGTTCCTCCTCATCGTGTAACTGACCAACCAAGTGGGTATGGATCTCACTACAGTGGCAACCATATGGATTACAGTCGGAGAGCTTTTGGAGAGGCATTGGATAGCGCTACCCGTTCTAGTTCTAGGTCACGCCGCCCTGATGGAGTTAGCCCAATCTCTTATCCACCTTactaa 597 0.4137 MSGNSSCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFAISGRDKNTPNSSTATTPTSNSSQRPRPYPVQINSSENFQHSTRQSIPDRFSDHAVNYSQVPPHRVTDQPSGYGSHYSGNHMDYSRRAFGEALDSATRSSSRSRRPDGVSPISYPPY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04185 198 SMART rrm1_1 8 82 IPR000504 GO:0003723
Tsu01g04185 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Tsu01g04185 198 Gene3D - 2 96 IPR012677 -
Tsu01g04185 198 MobiDBLite consensus disorder prediction 85 115 - -
Tsu01g04185 198 MobiDBLite consensus disorder prediction 140 198 - -
Tsu01g04185 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Tsu01g04185 198 SUPERFAMILY RNA-binding domain, RBD 4 80 IPR035979 GO:0003676
Tsu01g04185 198 MobiDBLite consensus disorder prediction 143 159 - -
Tsu01g04185 198 PANTHER OS01G0876500 PROTEIN 1 195 - -
Tsu01g04185 198 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 195 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04185 5 87 Eukaryotic Initiation Factors Gene Family AT1G49760 28.916 3.38e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04185 K12831 - gmx:100784532 312.383