Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04171 ATggaacaaaaaatgaaaaccaCAACTTCTCCTCCTCAATTACCAATCCATATTCCCATTCACACCATGCTATCAAACTCTACTCCATCTTCATCTTCGTCACCTCCTTTACAATCTCCTACGCCTTTCCCTTCACCGCCTTCTCAATATTCTCCTCCGTCTGTCGCTCTTCAACCACCATCTCCTCCTCCACCAATTGTGGTTAGCCCTTGTGCTGCCTGCAAGATCCTTCGTCGCAGGTGTGTTGAGAAGTGTGTGTTAGCTCCCTATTTTCCTCCGACCGATCCACTCAAGTTCACCATTGCTCATAGAGTTTTTGGAGCTAGCAACATCATTAAGTTTTTACAGGAACTACCTGAACCTCAAAGAGCAGATGCTGTTAGCAGCATGGTCTATGAAGCTAATGCTAGGATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAGCTACAAACACAGCTAGCCAAAGCACAAGCTGAGATAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCACTAATTTGCATGGAAATGAGTAATCAATCATCACCACAAGATCATAACATGATAATTAATCAGCCACAACCTCATGTTGATATGAGTTATTTCTTAGAAGACAACAATTTTGGGTCTGCTTGGGAGCCTCTTTGgacatga 687 0.4148 MEQKMKTTTSPPQLPIHIPIHTMLSNSTPSSSSSPPLQSPTPFPSPPSQYSPPSVALQPPSPPPPIVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEIVNMHCQQANLVALICMEMSNQSSPQDHNMIINQPQPHVDMSYFLEDNNFGSAWEPLWT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04171 228 Pfam Lateral organ boundaries (LOB) domain 70 167 IPR004883 -
Tsu01g04171 228 Coils Coil 149 176 - -
Tsu01g04171 228 ProSiteProfiles LOB domain profile. 69 170 IPR004883 -
Tsu01g04171 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 57 225 - -
Tsu01g04171 228 MobiDBLite consensus disorder prediction 35 61 - -
Tsu01g04171 228 MobiDBLite consensus disorder prediction 1 34 - -
Tsu01g04171 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 57 225 - -
Tsu01g04171 228 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04171 Tsu-Chr1 49610090 49611704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04171 66 228 AS2 family AT1G07900 66.474 1.09e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu01g04171 LOB 6.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04171 - - gmx:100806667 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04171 01 49610090 49611704 Tsu01g04171 01 49610090 49611704 ECH