Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04164 ATGGGGAGGAAAGGAAGTTGGTTTTCATCTGTGAAGAaacttttctttatttcttctgATTCTTCCAAAAAAGAACAGAAAGAACAGAAACCTCAAACTCATAAGCCGTCAAAGTTAGGATGTTTTGGACATCATCCATATGATGATGCTGAGTGGAAAACTGGAGGAGTAGCACCAATAACCGTTGTTCCGGTTCCATCTCTTCCTGCGAAAAAAGATGTTAAAAAACCAAAGAAAATTAAGGcagaggatgatgaacaaaacaaacaagctTTAACATTGCTTTTAGCCACAGCTGTTGCTACCGGTGCCGCAGTTGCCGCTGCTCAGGCTGCAGAGACCGCTCGTCTCAAAACAGTTCCTCGTTGTTATATTGGAAAATCAGACGAAGAAATAGCCGCTATCAAAATTCAAACCGCCTACCGCGGATATCTGgcAAGGAGAGCGTTGCGTGGATTGAGAGGTTTGGCGAGGTTGAAAGCATTGGTGAAAGGACAATCTGTTCAAAGACAAGCGGCTACTACATTACAATGCATGCAAACTCTTTCGCGATTGCAATCGCAAGTTAGTGCGAGGAAGATTAGAATGTCAGAGGAGAATCAATCTTTCCAACGCCAACTTCAGCATAAACGTGAAAGGGAAATGGGCAAGTTACAAGCTGCCCAACCTATTGGAGAAGGATGGGATTATAGTTCACAATCAAAGGAGCAAATTCAAGCAAAATTGTTGAACAGACAAATCGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAGCAAACATGGAGGAACTCTTCAAAACCTACAGATGCATCAATTATGGATCCAAACGATCCTCATTGGGGATGGAATTGGCTTGATAGATGGATGGCTTCAAGACCATGGGAAGGTCAAACCAATAAGGATGAAAAGAATCATAGATCAGCAAAAGGTGCTGCAAGCCATACTATGTCAGTTGGAGAAATCTCCAAATTATATGCTCAAagagatcaaaatcaaaatcaaaatcaaaatcaaaatcaagataATAAAAATTCCCCTAGAAGCCAAAAACCAAATAATTCAAATCTACCTTCAAGGATACCTTCAATGCCTAAAGGAGGAAAAACAAATACATCAAGTCCAAAGAGTGGTTCATGGGGTGGTAATGATGACTCGAAaattaatttcaacaacaaaaaacccgAAACCAATCGAAGACATAGCATTGCGCAGGTATCTCTATTGAAAGAAGATGAAGCAAACTCACCTGTAAAAGCTAAATCTAAAGTGCAAAGTTCTTCTACAAAGAAGCAGCTTTCTTTCTCAGCAGCAGCTTCTCCATCTGATACTAGAAGGCATTCTGTTCCACCTAAAATCGGAACAAACTCTACTAAGAATGTTGCTACTAATCTCCCTGAAGTGAAAGTGAAAGGCAAAAATGGAGGAAACAGATAG 1449 0.3789 MGRKGSWFSSVKKLFFISSDSSKKEQKEQKPQTHKPSKLGCFGHHPYDDAEWKTGGVAPITVVPVPSLPAKKDVKKPKKIKAEDDEQNKQALTLLLATAVATGAAVAAAQAAETARLKTVPRCYIGKSDEEIAAIKIQTAYRGYLARRALRGLRGLARLKALVKGQSVQRQAATTLQCMQTLSRLQSQVSARKIRMSEENQSFQRQLQHKREREMGKLQAAQPIGEGWDYSSQSKEQIQAKLLNRQIAAMRREKALAYASTHQQTWRNSSKPTDASIMDPNDPHWGWNWLDRWMASRPWEGQTNKDEKNHRSAKGAASHTMSVGEISKLYAQRDQNQNQNQNQNQDNKNSPRSQKPNNSNLPSRIPSMPKGGKTNTSSPKSGSWGGNDDSKINFNNKKPETNRRHSIAQVSLLKEDEANSPVKAKSKVQSSSTKKQLSFSAAASPSDTRRHSVPPKIGTNSTKNVATNLPEVKVKGKNGGNR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04164 482 MobiDBLite consensus disorder prediction 300 320 - -
Tsu01g04164 482 MobiDBLite consensus disorder prediction 260 280 - -
Tsu01g04164 482 ProSiteProfiles IQ motif profile. 130 158 IPR000048 GO:0005515
Tsu01g04164 482 PANTHER IQ-DOMAIN 5-RELATED 1 472 - -
Tsu01g04164 482 MobiDBLite consensus disorder prediction 335 482 - -
Tsu01g04164 482 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 472 - -
Tsu01g04164 482 MobiDBLite consensus disorder prediction 20 34 - -
Tsu01g04164 482 Coils Coil 326 346 - -
Tsu01g04164 482 MobiDBLite consensus disorder prediction 423 468 - -
Tsu01g04164 482 Pfam IQ calmodulin-binding motif 133 151 IPR000048 GO:0005515
Tsu01g04164 482 MobiDBLite consensus disorder prediction 20 42 - -
Tsu01g04164 482 MobiDBLite consensus disorder prediction 335 392 - -
Tsu01g04164 482 MobiDBLite consensus disorder prediction 260 276 - -
Tsu01g04164 482 SMART iq_5 129 151 IPR000048 GO:0005515
Tsu01g04164 482 Coils Coil 193 213 - -
Tsu01g04164 482 Gene3D iswi atpase 127 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04164 Tsu-Chr1 49565462 49567548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04164 1 457 IQD Protein Family AT5G03040 38.821 6.81e-85 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04164 - - gmx:100807725 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04164 01 49565462 49567548 Tsu01g04164 01 49565462 49567548 ECH