Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04150 ATGAGTTATTCCATTTCCATATtctatgttgttttgtttttgtccaTTTTCTGCTTAGAAATTTCATTGGCTTCTAACATAGAAGATCAAAAGAGAGACAAGATTGGTTGGTTACCAGGACAACCAAAGAATGTTGGATTTGAACAGTATTCAGGTTATGTGACTGTGAATGAGAAGAGAGGAAGAGCATTGTTTTATTGGTTGACTGAAGCACCACTGAGTCGTGAACCCGATTCAAGGCCACTAGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATAGCTTATGGTGCTTCTGAAGAAATTGGCCCTTTTCGTATTAGGCCTGATGGCAAGTCCCTTTTCTTGAATCCTTATGCTTGGAACAATTTGGCAAACTTACTATTCCTTGATTCTCCTGTTGGTGTTGGTTTTTCTTATTGTAATAAATCAGCAGATATGCACACATTTGGTGACCAGAAAACAGCTGAGgatgcatatatttttctagTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATGGCTGGGGAAAGTTATGCAGGTCATTATGTTCTTCAGTTAGCTCAAATTGTTAACCAGAGAAATAAGGGAATCAATAATCCAGTTATAAATTTTAAGGGATTTATGGTTGGAAATGGCGTGATTGATGATTATCATGATTATGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGattctacatataaaatgctAAACATTGCCTGTGATTTTGAGTCCATTCAGCATCCATCAGCACAATGTTGGCAGGCACTTACAGTTGCAGATACTGAGCAAGGAGACATTGATGGATACAGCATTAATACACCACTTTGTAACAATACTGCATCACTCAGAAATGGCTTGAATCGTCGTTATCCATGGATGTATAGAGGATATGATCCATGTACTGAAAGGTATTCTGATGTGTATTTCAATCGTCCAGAAGTTCAGAAAGCACTTCATGCAAATGTAACTGGGATTTCATATGCATGGATGGCATGCAaTGGTGCTGTTTGGAATTATTGGACTGATTCCCCGTTGTCTATGCTTCCTATATATCGAGAACTTATTAATGCCGGTCTACGGATATGGGTATTTAGTGGAGACAGTGATGCTGTAATTCCACTGACTGCAACTCGATATTCTATTGGCGCCTTGAAGTTACCAACCATAATCAATTGGTACCCTTGGTATGATAATGGCAAGGTTTGTGGATGGAGTCAAGTTTACAAAGGGTTAACATTGGTGACAGTAAGAGATGCTGGACATGAAGTTCCTCTTCATAAGCCTCGTGAGGCATTTATTCTTTTTAGATCATTCTTGGAGAATAAGTATATGCCATCATCAAGTTAG 1386 0.3701 MSYSISIFYVVLFLSIFCLEISLASNIEDQKRDKIGWLPGQPKNVGFEQYSGYVTVNEKRGRALFYWLTEAPLSREPDSRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKSLFLNPYAWNNLANLLFLDSPVGVGFSYCNKSADMHTFGDQKTAEDAYIFLVNWFERFPQYKHREFYMAGESYAGHYVLQLAQIVNQRNKGINNPVINFKGFMVGNGVIDDYHDYVGTFEYWWTHGLISDSTYKMLNIACDFESIQHPSAQCWQALTVADTEQGDIDGYSINTPLCNNTASLRNGLNRRYPWMYRGYDPCTERYSDVYFNRPEVQKALHANVTGISYAWMACNGAVWNYWTDSPLSMLPIYRELINAGLRIWVFSGDSDAVIPLTATRYSIGALKLPTIINWYPWYDNGKVCGWSQVYKGLTLVTVRDAGHEVPLHKPREAFILFRSFLENKYMPSSS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04150 461 Gene3D - 313 350 - -
Tsu01g04150 461 Gene3D - 360 453 - -
Tsu01g04150 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 459 IPR001563 GO:0004185|GO:0006508
Tsu01g04150 461 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Tsu01g04150 461 Pfam Serine carboxypeptidase 39 454 IPR001563 GO:0004185|GO:0006508
Tsu01g04150 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Tsu01g04150 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Tsu01g04150 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Tsu01g04150 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Tsu01g04150 461 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Tsu01g04150 461 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Tsu01g04150 461 SUPERFAMILY alpha/beta-Hydrolases 32 458 IPR029058 -
Tsu01g04150 461 PANTHER CARBOXYPEPTIDASE 19 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04150 Tsu-Chr1 49470242 49472964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04150 323 455 Calmodulin-binding Proteins AT2G22960 29.851 2.81e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04150 K16297 - gmx:100805722 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04150 01 49470242 49472964 Tsu01g04150 01 49470242 49472964 ECH