Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04139 ATGGCAAAAGATGTTGAAGTTGCTGAGCGTGGTTCTTTCTCAAACAAAGACTACCATGACCCTCCACCAGCACCACTCATTGATGCTGAAGAACTCACTAAATGGTCCTTTTACAGGGCCCTTATTGCTGAGTTCATTGCAACTTTACTTTTCCTTTATGTTACTGTTTTGACTGTTATTGGTTACAGTATTCAAACTGATGTTAAAGCTGGTGGTGATGTTTGTGGTGGTGTTGGTATTCTTGGTATTGCTTGGGCTTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATTTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGTAAGGTGTCTTTGATCCGAGCAATTATGTACATGGTAGCTCAGTGTTTAGGGGCTATTGCTGGAGTTGGGTTGGTTAAGGCTTTTCAAAAGTCTTACTTTGATAGATATGGTGGTGGAGCTAATTTTCTCCATGATGGTTACAGTACTGGTGTTGGATTAGGTGCTGAGATCGTTGGTACTTTTGTGTTGGTATACACTGTTTTCTCTGCTACTGATCCCAAAAGAAGTGCTAGAGATTCACATGTTCCGGTAtgtttttaa 615 0.4163 MAKDVEVAERGSFSNKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYSIQTDVKAGGDVCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAIAGVGLVKAFQKSYFDRYGGGANFLHDGYSTGVGLGAEIVGTFVLVYTVFSATDPKRSARDSHVPVCF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04139 204 Gene3D Glycerol uptake facilitator protein. 24 204 IPR023271 -
Tsu01g04139 204 PANTHER AQUAPORIN PIP2-4-RELATED 1 202 - -
Tsu01g04139 204 Pfam Major intrinsic protein 31 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04139 204 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 202 IPR034294 -
Tsu01g04139 204 SUPERFAMILY Aquaporin-like 31 201 IPR023271 -
Tsu01g04139 204 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04139 204 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04139 204 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04139 204 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g04139 204 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04139 Tsu-Chr1 49323806 49325188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04139 1 202 Major Intrinsic Protein MIP AT2G37170 82.178 8.74e-120 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04139 K09872 - gmx:100817292 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03870 07 44824186 44825997 Tsu01g04139 01 49323806 49325188 ECH
Tsu01g04139 01 49323806 49325188 Tsu01g04139 01 49323806 49325188 ECH