Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04136 ATGTTTGTGGTTATGGATTCCATGGAAAAGACATCAGAAAAGTGCTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATGGCAAAGTAGATTTCAACAAAACTCGTGTTCCACCACTCATTCCTTGTAGAATCTCTGCTATGAAATACATGGCAGACCCTGAAACTGATGAAGTTTATGTTAAAATGAGATTAACACCTTTAAGAGAAAATGAATTAGATTTAGAAGAAGATTGTTTCTTTGGAAACAATGGTTTAGAGAGTCAAGAAAAACCAACTTCTTTTGCTAAAACATTGACACAATCTGATGCAAATAATGGCGGTGGTTTTTCTGTTCCTAGATACTGTGCTGAGACTATTTTTCCTAGATTGGATTATTCTGCAGAACCACCTGTTCAGACAATTATTGCTAAGGATATGCATGGACAGTGTTGGAAGTTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGCAATTTTGTGAATCATAAGAAGCTTGTTGCTGGTGATTCAATTGTGTTTTTAAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGAAGAGCTAAGAAAGGTGGAATTGGTGGTGGAGTAACTGATCAGTTTTCGAATTCTTCGAGTAATTGGAACCGTGTTTCGCCTTTGTTCGGTGGTGGTGGTTCTGGTTTTTTATGtggaaatgaaaatagaaaaagcGGTGGTACTTGTGGTGATGATGATTTGATGAGAAGAGTTGGTTCTGAATCTGTTGTTGAAGCTGTGAATTGTGCTATTAATGGAAGATCTTTTGAAGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAAGTTTCATCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCATTTGAAACTGAGGATTCTTCTAGGATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGAATCTCCTTGGCGTCTTCTTCAGGTAGTATGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAATTAGTCTCAAACATGCCAAATTTCAATCTTTCACCATTCACACCACCAAGAAAAAAACCAAGGTTTATTCAAGATCCATATTTTCATCTCATAAATCAACTTCCAATGccaacatcaacatcatcaacattcTCAAACATTAATCTTCTCAATTATGCAAACTCATCTCTCTGTAACATTCAAGAAAATAGTACTAATTATAGTTCATCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGgatcaaataataattttccaTCTGATTTAATTCCTTTCAACAAATTACAACAAGACATGTTTCTTGGTAATTTGTCAATGtcaagatttgataaaaaacaaCCTATTAGGCCACCTTGTGGACCCAACAACAATAATAAGAACAATGTTGACTTGTCTTGTTTGTTGAGTGTAGGAAATTCTGGTCAAAGTTTTAAGGAATTATCATCCAATATTGAAGCAAAAGCACCCAATAAACAAcatcaaattttgttatttgGAAAACTCATTCACACTGAACAACAGAACAATTCTTCAAATGTTTCAAAGAGTGGTTCTTTATCTGAAGGAACATCTTTGAAAACATCaaatgtttcttcttcttctgatccAGTTGAGAATTCTTCTGATGGAGGCTCACCTTGGTATaaggatcaacaacaacataagaCTGATCTTGTTGGAACAGaaaatgttacaacattgtgtaTGGCTTCATAA 1884 0.3301 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFNKTRVPPLIPCRISAMKYMADPETDEVYVKMRLTPLRENELDLEEDCFFGNNGLESQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGVTDQFSNSSSNWNRVSPLFGGGGSGFLCGNENRKSGGTCGDDDLMRRVGSESVVEAVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPESPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTSTSSTFSNINLLNYANSSLCNIQENSTNYSSSSSIQGARHAQFGSNNNFPSDLIPFNKLQQDMFLGNLSMSRFDKKQPIRPPCGPNNNNKNNVDLSCLLSVGNSGQSFKELSSNIEAKAPNKQHQILLFGKLIHTEQQNNSSNVSKSGSLSEGTSLKTSNVSSSSDPVENSSDGGSPWYKDQQQHKTDLVGTENVTTLCMAS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04136 627 Pfam Auxin response factor 283 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu01g04136 627 Gene3D - 320 394 - -
Tsu01g04136 627 MobiDBLite consensus disorder prediction 564 614 - -
Tsu01g04136 627 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Tsu01g04136 627 SMART B3_2 118 220 IPR003340 GO:0003677
Tsu01g04136 627 CDD B3_DNA 117 218 IPR003340 GO:0003677
Tsu01g04136 627 Gene3D - 116 220 IPR015300 -
Tsu01g04136 627 SUPERFAMILY DNA-binding pseudobarrel domain 110 218 IPR015300 -
Tsu01g04136 627 PANTHER AUXIN RESPONSE FACTOR 16 7 617 - -
Tsu01g04136 627 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 617 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu01g04136 627 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04136 Tsu-Chr1 49262079 49265020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04136 1 605 B3 DNA Binding Superfamily AT4G30080 53.409 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu01g04136 B3 5.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04136 - - mtr:MTR_1g094960 1070.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04136 01 49262079 49265020 Tsu01g02435 01 26292214 26295142 ECH
Tsu07g03873 07 44849705 44851814 Tsu01g04136 01 49262079 49265020 ECH
Tsu01g02435 01 26292214 26295142 Tsu01g04136 01 49262079 49265020 ECH
Tsu01g04136 01 49262079 49265020 Tsu01g04136 01 49262079 49265020 ECH