Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04135 ATGGTTGGACCAAACTTCATGGATGAGTTAGACTGCGGCAGTTTCTTTGATCACATCGACGACCTTCTCGATTTCCCAGTCGACGATGTTGATACCGCTGCCGCTTCCTTGCCGACTGTTGCCTCAGTCGGAAATTGCAACTCGCTGGCGAGTATCTGGCCTAATGAGTCGGAGTCATTTCCTGCTTCTGACTCGGTGTTTTCAGCTGGCAACAGTGCTTCTGACCTCTCGGCAGAGCTCTCCGTTCCGTATGAAGACATTGTTCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCGTTTAGCGAAGGGAGTCTCACAATGAAGAAAGTGGAGCAGCAGCCATCATTATGTGTGCCTAAGGAGGAGTCTGTGCATAACCAATTCCAGACATCAAGTCCAGTTTCTGTGCTCGAAAGCAGCAGTTCGTGCTCCGGTGGAAAGCCAACAACAGGGATTTACATCCCTGTGCCATGTGGACGTGCGCGCACCAAACGTCCACGTCCTGCAACCTTCAACCCTCGTTCAGCCATGCAGCTCATTTCCCCTACTTCTTCCGCGGGGGAGAATGTGCAGCCCAATGTTATCTCCACCAAGGCAGCGTCTTCCGATTTTGACAGTTTTGCTGAGTCTCGAATTGTGGCCAAGAAACCAAAGATAGCTTCTGGGGAGaccaagaagaaaaagaaaatcaagatGCCATTtcctgctgctgctgctgctccAGCTGACAGTGGCGATCAGAATGGTTCGCTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACACCACAATGGAGGGCAGGGCCAATGGGTCCAAAAACACTCTGCAATGCTTGTGGTGTTCGCTACAAGTCAGGCCGTCTTTTCCCTGAATACCGGCCTGCTGCTAGTCCAACATTTTGTCCAGCTTTGCACTCCAATTCCCACAAGAAGGTCCTTGAAATGAGAGGCAAGGATATTGAGAATTCCGGTTTTGAATCACATTCAGCTGCCTCCCCCGAACTCATTCCAAACACTAACAGCATTCTCGCCATGGAGTACATTTGA 1056 0.4782 MVGPNFMDELDCGSFFDHIDDLLDFPVDDVDTAAASLPTVASVGNCNSLASIWPNESESFPASDSVFSAGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSEGSLTMKKVEQQPSLCVPKEESVHNQFQTSSPVSVLESSSSCSGGKPTTGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSAGENVQPNVISTKAASSDFDSFAESRIVAKKPKIASGETKKKKKIKMPFPAAAAAPADSGDQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPALHSNSHKKVLEMRGKDIENSGFESHSAASPELIPNTNSILAMEYI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04135 351 CDD ZnF_GATA 256 303 IPR000679 GO:0006355|GO:0043565
Tsu01g04135 351 ProSiteProfiles GATA-type zinc finger domain profile. 251 287 IPR000679 GO:0006355|GO:0043565
Tsu01g04135 351 Gene3D - 254 301 IPR013088 GO:0006355|GO:0008270
Tsu01g04135 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 314 - -
Tsu01g04135 351 Pfam GATA zinc finger 257 290 IPR000679 GO:0006355|GO:0043565
Tsu01g04135 351 ProSitePatterns GATA-type zinc finger domain. 257 282 IPR000679 GO:0006355|GO:0043565
Tsu01g04135 351 PANTHER GATA TRANSCRIPTION FACTOR 8 1 351 - -
Tsu01g04135 351 SMART GATA_3 251 301 IPR000679 GO:0006355|GO:0043565
Tsu01g04135 351 PIRSF Txn_fac_GATA_plant 3 344 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu01g04135 351 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04135 Tsu-Chr1 49244706 49248922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04135 19 319 C2C2-Gata Transcription Factor Family AT4G32890 36.842 1.28e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu01g04135 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04135 - - gmx:100815693 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04135 01 49244706 49248922 Tsu01g04135 01 49244706 49248922 ECH