Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04125 ATGGGTAAAGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTTGACTCTGGTAAGTCAACTACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGTATCACAATTGACATTGCATTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGggatttcattaagaacatgaTTACTGGAACATCCCAAGCTGATTGTGCTGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAAGACGGACAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTCAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAGTACTCTAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTCGGCTATAACCCTGAAAAAATTCCATTTGTTCCCATCTCTGGATTTGAGGGAGATAACATGATTGAGCGCTCTACCAATCTTGATTGGTACAAGGGTCCGACCCTTCTTGAGGCCCTTGACCAAATCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCActtcaggatgtctacaagattGGAGGAATTGGAACTGTGCCCGTGGGACGTGTTGAGACTGGTTTCTTGAAACCTGGAATGGTGGTGACTTTTGCACCAACTGGACTGACTACTGAAGTCAAGTCCGTGGAGATGCACCATGAAGCTCTCCAAGAGGCCCTTCCCGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGTTATGCCCCTGTTCTGGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACCAAGATCGATAGGCGTTCTGGTAAGGAAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTTGCTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGGAGAAGAAGGAACCCAGCGGAGGACCTAAGCCCAAGAAGAAGTGA 1269 0.4515 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGFLKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVAETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGGPKPKKK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04125 422 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 310 408 IPR009001 -
Tsu01g04125 422 Gene3D Translation factors 229 312 - -
Tsu01g04125 422 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Tsu01g04125 422 Pfam Elongation factor Tu C-terminal domain 310 408 IPR004160 -
Tsu01g04125 422 Pfam Elongation factor Tu domain 2 248 309 IPR004161 GO:0005525
Tsu01g04125 422 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 310 - -
Tsu01g04125 422 Gene3D - 1 226 IPR027417 -
Tsu01g04125 422 CDD EF1_alpha_II 230 318 - -
Tsu01g04125 422 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 PANTHER TRANSLATION FACTOR 310 416 - -
Tsu01g04125 422 PANTHER TRANSLATION FACTOR 1 310 - -
Tsu01g04125 422 CDD EF1_alpha_III 310 405 - -
Tsu01g04125 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Tsu01g04125 422 SUPERFAMILY Translation proteins 231 310 IPR009000 -
Tsu01g04125 422 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Tsu01g04125 422 CDD EF1_alpha 9 227 - -
Tsu01g04125 422 Gene3D Translation factors 313 409 - -
Tsu01g04125 422 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 310 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04125 Tsu-Chr1 49168619 49170060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04125 1 416 Eukaryotic Initiation Factors Gene Family AT5G60390 90.618 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04125 K03231 - gmx:100801611 799.66