Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04124 ATGGGTAAAGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACCGGTCACTTGATCTACAAACTTGGTGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCCGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGTATCACAATCGACATTGCTCTTTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGagatttcattaagaacatgaTTACTGGAACATCCCAAGCTGATTGTGCTGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAAGATGGACAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTCAAGCAGATGATCTGCTGCTGCAACAAGGTATTTAATATGGATGCCACTACACCCAAGTACTCAAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGAGAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACCAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCActtcaggatgtctacaagattGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTTTCTTGAAGCCTGGAATGGTGGTGACTTTTGCACCAACTGGACTAACTACTGAAGTCAAGTCCGTGGAGATGCACCATGAAGCTCTCCAAGAGGCCCTTCCCGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATAACCCAGCTAAGGAGGCTGCTAACTTTACCTCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAACGGTTATGCTCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACCAAGATCGATAGGCGTTCTGGTAAGGAAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTTGCTGAGACTTTCTCTGAATATCCTCCACTCGGTCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGGAGAAGAAGGAACCCAGCGGAGGACCTAAGCCCAAGAAGAAGTGA 1341 0.4489 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKVFNMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGFLKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDNPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVAETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGGPKPKKK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04124 446 SUPERFAMILY Translation proteins 229 323 IPR009000 -
Tsu01g04124 446 Pfam Elongation factor Tu GTP binding domain 6 225 IPR000795 GO:0003924|GO:0005525
Tsu01g04124 446 Gene3D Translation factors 326 433 - -
Tsu01g04124 446 CDD EF1_alpha_II 233 323 - -
Tsu01g04124 446 Pfam Elongation factor Tu C-terminal domain 325 432 IPR004160 -
Tsu01g04124 446 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 233 IPR000795 GO:0003924|GO:0005525
Tsu01g04124 446 Gene3D Translation factors 232 319 - -
Tsu01g04124 446 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Tsu01g04124 446 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 440 - -
Tsu01g04124 446 Pfam Elongation factor Tu domain 2 251 316 IPR004161 GO:0005525
Tsu01g04124 446 Hamap Elongation factor Tu [tuf]. 2 435 IPR004539 GO:0003746|GO:0005525|GO:0006414
Tsu01g04124 446 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 436 IPR004539 GO:0003746|GO:0005525|GO:0006414
Tsu01g04124 446 PANTHER TRANSLATION FACTOR 1 440 - -
Tsu01g04124 446 Gene3D - 1 231 IPR027417 -
Tsu01g04124 446 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 329 432 IPR009001 -
Tsu01g04124 446 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Tsu01g04124 446 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Tsu01g04124 446 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Tsu01g04124 446 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Tsu01g04124 446 CDD EF1_alpha 9 230 - -
Tsu01g04124 446 CDD EF1_alpha_III 326 429 - -
Tsu01g04124 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04124 Tsu-Chr1 49161301 49162721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04124 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 94.318 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04124 K03231 - gmx:100801611 844.343