Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04123 ATGGTTCTGTTTTACCCCAAAAAAGAAGGCCTAACAGAAATATCCCATTTCATTGCTCAATTGAAAAAATCACTTTCTGAAACACTAGCCATTTTCTACCCTGTAGCAGGCAGAAGAAAAGACCACACATTTATCACTTGTAATGATGAAGGTGCTGTTTACTTGGAAGCCAAGGTAAACCATACCATGGTTGAATTTCTCAATCCACCTAAGCTAGAATTTCTAAATAAATTGCTTCCATGTGAGCCTAATAAGATGCATCGAAATGGAGAAGATTTACCACAAGTTCTTGTACAAGTTAACATGTTCAATTGTGGTGGAATAGCTATAGGTACTTGTAATCTCCATACCCTCCTTGACGGTTGTTCCGGAAGTCTTTTCCAAACTACTTGGGCTGCCATTTGTCGAGGCTGCTCTAGCGAAAAATTACCACGCCCCGATTTTTTTTCCGCTTCTTCTTGCTTTCCAACAATAAATCATGTTGGTAAGAATACTAATGAGGGCTTAGatggacaaaaaaaatgtagcaCAAGAAGATTTGTGTTTGGTTCCGAATTCATCGACACTCTAAGAGATAAAGTAAAAGACGACGATGACAATGATGATGGAAGATCAAAGTTTCCTACAAGATATGAAGCATTGGCTGCTTTTATTTGGAAACACATGACACTTGCATGTAAAATGGAGGGAGGTGTAGAAAGCAAAAGACCAGCATTAGCTATACATATTGTGGACATGAGAAGAAGGATGGGCGAGCCTTTTTCTAAATACACAATAGGCAACATTTTGTGGCCAGTGATGGTGTTATGTGAAAAAGTTAATGAAgaaactaatattaaatatttggtTAAAATTTCTAAGGAGAAATTTGGTAAAATTTCAAGGGAATTGTTTCTAAGAGTGAAGAGTGATCCAAGTATTTTAGGGAGCAATGAATGTGTGGATTTGCCACAAGATATAGAAAAAACAAGTCCAATTCCAGTTGTTTTGACAAGTTGGTGTGGTTTGAATTTTAGTGAGCTTGATTTTGGTTGGGGAAAGCCTTTTTGGGTTGGTGTTAGAGGTGGTGATCAAGAAACTCTTCCTAATGTAGCTGTTATTATGGAAACATATGAAGGCATGGAAGCTTGGGTTACAATGGAAATGCAACATATAGCTAACTTGGAAAAGGATATGGAGTTTCTTAAATTAGCTTTGCCTAATCCTAGTGTTTCAAACCTTTAG 1224 0.3627 MVLFYPKKEGLTEISHFIAQLKKSLSETLAIFYPVAGRRKDHTFITCNDEGAVYLEAKVNHTMVEFLNPPKLEFLNKLLPCEPNKMHRNGEDLPQVLVQVNMFNCGGIAIGTCNLHTLLDGCSGSLFQTTWAAICRGCSSEKLPRPDFFSASSCFPTINHVGKNTNEGLDGQKKCSTRRFVFGSEFIDTLRDKVKDDDDNDDGRSKFPTRYEALAAFIWKHMTLACKMEGGVESKRPALAIHIVDMRRRMGEPFSKYTIGNILWPVMVLCEKVNEETNIKYLVKISKEKFGKISRELFLRVKSDPSILGSNECVDLPQDIEKTSPIPVVLTSWCGLNFSELDFGWGKPFWVGVRGGDQETLPNVAVIMETYEGMEAWVTMEMQHIANLEKDMEFLKLALPNPSVSNL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04123 407 PANTHER F21J9.9 1 402 - -
Tsu01g04123 407 Gene3D - 172 397 IPR023213 -
Tsu01g04123 407 Gene3D - 1 165 IPR023213 -
Tsu01g04123 407 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 402 - -
Tsu01g04123 407 Pfam Transferase family 2 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04123 Tsu-Chr1 49149913 49151136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04123 21 390 Monolignol Biosynthesis Gene Families AT5G48930 24.000 1.92e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04123 - K13065 gmx:102668997 624.394