Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04122 ATGGAATTTTCAAATGGAGATCATGATCATGTCAACAATGCTTGTTGTAATGGTAATGGTGGAACAACAACAATTACAAGTGAGAATAATAATGACCCATTGAATTGGGGTATGGCTTCGGATTCAATGAGGGGTAGTCACCTAGATGAGGTGAAAAGAATGGTTGAGGAATACCGGAAACCGGTTGTGGCATTAGGTGGAAGAGGTTTAACAATATCACAAGTGGCTGCAATTGCAACACATAATACCGGTGTGACGGTTGAACTTGATGAAAAGACACGCGCCGCTGTTAAAGCTAGCAGTGATTGGGTTGTTGATAGTTTGAATAATGGGACTGATAGCTATGGTGTTACCACTGGATTTGGTGCAACCTCACATAGGAGAACTAAACAAGGTGGTGCTCTCCAAAAAGAACTCATCagATTTCTGAATGCTGGAATTTTCGGCAATGGAACAGAATCGAGTCAAACTTTACCTCACACGGCCACAAGAGCAGGCATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAATTATGGAAGCAATAGCTAAATTTCTGAACCATAACATAACACCATGTCTTCCATTAAGAGGTACAATCACTGCATCAGGTGACTTAGTTCCTTTGTCATATGTTGCTGGCCTTTTAATTGGAAGACCAAACTCAAAATCTATTGGACCTGATGGACAAGTTCTTAATGCTAAAGAAGCTTTTCAACTAGCTGGAATTGAAAGTGGCTTTTTTGAGTTGCAACCTAAAGAAGGTTTAGCACTAGTCAATGGTACTGCTGTTGGATCAGGTTTGGCTGCATTGGTTCTTTTTGATACAAATTTACTTGTTGTTCTATCAGAACTTTTATCTGCGATTTTCGCTGAAGTTATGCAAGGAAAACCGGAATTCACTGATCATTTGACTCATAAGTTGAAACACCATCCTGGTCAAATTGAGGCCGCGGCTATTATGGAACATATTTTAGATGGAAGTTATTATGTTAAGGCTGCTCAAAAATCACATGAGACTGATCCACTTCAGAAGCCTAAACAAGATAGGTACGCGCTTCGAACATCGCCGCAGTGGCTTGGACCGCAGATTGAAGTGATTCGACACGCAACAAAGATGATTGAGAGGGAGATAAATTCTGTGAATGACAATCCACTTATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAAGGTACACCAATCGGTGTTTCGATGGACAACACGCGTTTAGCCATCGCTTCGATTGGAAAACTCTTGTTTGCTCAGTTCTCTGAGCTTGTGAATGACTTCTATAACAACGGATTGCCTTCGAATCTAACCACAGGCCGCAATCCTAGTTTGGATTACGGATTCAAAGGAGCAGAAATTGCAATGGCATCTTATTGCTCAGAACTTCAATACCTTGCTAATCCTGTCACCACTCATGTTCAAAGTGCTGAACAACATAACCAAGATGTGAACTCTTTAGGCTTGATATCATCAAGAAAAACTGCCGAAGCAGTTGAAATATTGAAACTCATGTCATCCACTTTCTTGGTTGCATTGTGCCAAGCAATTGATCTAAGGCACATTGAGGAAAACTTGAAAAGTGCTGTTAAGAACACTGTGAGTCAAGTGGCTAAGAGAGTTCTCACAATTGGCGTAAATGGTGAATTACATCCATCAAGGTTTAGTGAGAAGCATTTGCTCAATGTTGTTGAAAGTGAGTATGTTTTTGCTTACATCGATGACCCTTGTAATGCTACATACCCTCTAATGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTACAAAATGGTGACAATGAAGCAAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAACTCAAGACCCTTTTGCCTAAAGAAGTGGAAAGTGCAAGAATTGAAGTTGAAAATGGAAACCCTGCAATTCCTAATGGGATTAAGGAATGTAGGTCTTATCCATTGTACAAGTTTCTGAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAACTATATCACCTGGTGAGGAATGTGATAAGGTTTTCTCAGCATTGTGTGATGGAAGGTTCATTGATCCCATGTTGGAATGTCTAAACAAGTGGAACGGTGCTCCTTTACCTATATGCTAA 2172 0.4006 MEFSNGDHDHVNNACCNGNGGTTTITSENNNDPLNWGMASDSMRGSHLDEVKRMVEEYRKPVVALGGRGLTISQVAAIATHNTGVTVELDEKTRAAVKASSDWVVDSLNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSQTLPHTATRAGMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGQVLNAKEAFQLAGIESGFFELQPKEGLALVNGTAVGSGLAALVLFDTNLLVVLSELLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKSHETDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTTGRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLVALCQAIDLRHIEENLKSAVKNTVSQVAKRVLTIGVNGELHPSRFSEKHLLNVVESEYVFAYIDDPCNATYPLMQKLRHVLVDHALQNGDNEANSSTSIFQKIGAFEEELKTLLPKEVESARIEVENGNPAIPNGIKECRSYPLYKFLRETLGTSLLTGEKTISPGEECDKVFSALCDGRFIDPMLECLNKWNGAPLPIC 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04122 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
Tsu01g04122 723 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 32 713 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tsu01g04122 723 Gene3D - 536 657 IPR023144 -
Tsu01g04122 723 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 24 723 - -
Tsu01g04122 723 CDD PAL-HAL 68 533 IPR001106 -
Tsu01g04122 723 Pfam Aromatic amino acid lyase 70 546 IPR001106 -
Tsu01g04122 723 PANTHER HISTIDINE AMMONIA-LYASE 24 723 IPR001106 -
Tsu01g04122 723 SUPERFAMILY L-aspartase-like 32 723 IPR008948 GO:0003824
Tsu01g04122 723 Gene3D Fumarase/aspartase (Central domain) 270 718 - -
Tsu01g04122 723 Gene3D - 23 269 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04122 Tsu-Chr1 49133675 49140707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04122 5 723 Monolignol Biosynthesis Gene Families AT2G37040 78.423 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04122 K10775 - gmx:100801470 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04122 01 49133675 49140707 Tsu01g02417 01 26047216 26052274 ECH
Tsu07g03879 07 44937642 44945792 Tsu01g04122 01 49133675 49140707 ECH
Tsu01g02417 01 26047216 26052274 Tsu01g04122 01 49133675 49140707 ECH
Tsu01g04122 01 49133675 49140707 Tsu01g04122 01 49133675 49140707 ECH