Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04121 ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGTTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAATTTTGGGATATGCAAGATTATTCCACCTTTGCCCAAAccttcaaaaaaatatgttttttctaaTTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGGTCTAGATAATAGTTCTTTAGGTAATGGTAATTCTTGGAAAATGGGTTCAGATGGTAGTAACGGTGGGGTATCACGGGCTGTGTTTACCACAAGGCAACAAGAAGTGGGGCAGAATGTGAAAAAAACCAAAGGGGGAGTTCAGAAGCCACTGTCATGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACATTGGAACAGTTTGAGTCCAAATCGAAGTCTTTCGCAAGAAGCATTCTTGGTACATCGAAGGATGTTTCTCCATTGGTTGTAGAGGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATGTGGAGTATGCCAATGACGTGCCTGGCTCTGCTTTTGGAGAATCACAGGGTCAATTTTATCATAGTCATAGAAGGCAACGGAAAAGGACATATTATAAGAGTAGAGTAGATAGTGTTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAAAGATACACAAAATGACGAGTCTAATGGCGTTGCTGCCCCAAGTAATGCGGACTCATGTTTAGAGATGTCTAAATCAGCTATGACTATGCCAACGTCTACACCAGTTGAGGTGTTGCAGTCTTCTAAGGAGAAGGGTTCAGATGCCGACAATGATATGCAAGGCACTGCTGGTTGGAAGTTTTCAAACAGTCCTTGGAATTTGCAAGTTATTGCTCGCGCTCCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCGGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCTTCACACTGGCTCATCCAAGACTTGGTATTCTGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGCTGCTTTGAAAATTTTGGGCGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTGGCGACTCCACGATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCCATGCTTTCCCATCAGCAACTACTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTGTTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGtcagaaagaagaaagagagattTTAGTTAAACAGGCTTTTATAGAAGATATGCTGCTGGAAAACAAACTGCTATCCATTCTTCTCGGAAAAGAAGCTACTAAACAAGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGCCGGTTGCCTGATTTAGCTTCTACTTCTGGGACCTATAAGGCGGACATGTCAAATGATAATATTAGTTCTGCAGATAAAAGTAGCCATTCTCTGCTTGATGAGATGAGTTTGTGCATGGAGAATCTGTCCGATTTATATGTTGGTTGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGTGCATTGGCTTGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACACTGATACAGCCGACTGAAAAATCGATATTGGAACTTCTTCCTGATAATCATCATCTAGTTAAAGATTCCTCTCTGATCTCTGTAGCCTCCCTTCACAGTGCAGTTTCAAGTGATCTTTCTGTTTCTGATCTTGTGCCGGCAAAGGATTCACAGAATCAGTCATTGAACAAGTGCAATAAATATTGGAACACCTCCAGTAAATTTTTGAAGCCGCGAATTTTCTGCTTGGAGCATGCTGTTCAGATAGTAGAGATGTTGCAAAGCAAAGGTGGAGCCAATGTGCTTATTATTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCGGGGCAGTTGCAGAAGAGATACAAAGTGCTTTTGATCATAATGAGGTTCCAATGGATATTGCATCGCCAGAAAATTTGGCTCTGATAGATCTGGCaattgatggtgaagaagaaCTTAATGAATTTGAAGATTGGACATCTAAACTAGGCCTTAATCTGCGATTTTGTgtcaataatataaacaaatctCCATGTAAACAAGTTCCTCTGACACTAGCATTAGGGATGCAGTTCTTTAATAAACATCCTGGTTTATCTTTAAATTGGCATTCAAGGAAAACTCGGTCTAAAAGGTCAAACCGTTTAGCTCAGGCTAAACCTGACAGCACTCAGAGAAAGACGGATGATCCATTGCATGCAAGAATAGATGGTTCCACTGCTAAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGTAGCAAGCACGGTCCGTGAATCCCATGAAAAGTTAAAAAATGTGTCGGCTGTTTTGAGTGGCGATCATGACATACGTGTTTCTAAAGATGAGCTTGACACAGACAATTTCAGGAGTGGTTGTGCATTATCACGTGGCTCTGCTTCTGCGGCAATGTCTCCAACGCATCCTGAAATCCAGAATGCTGAAGCTCCCATCTGTCCAAGCTTAAATACCAGTGTCTCAGAAATATGTGGCAAAGAGAGCCAGGATTGTCAGGACAAGGGATATTCTGGCTCACTTACAGATGGAATAGACGAAAATGTTGATGTGTTTGGAACCAACCAAATTGCAGAAGCAATTGTCATTGATAGCAAGTGTAATAGCTTAGATTTGGATGGTGAACGGTATCAAGAACATCAGTCTGCGTGCAAAAGCAACATCAACGGTGAAGCTGTTTTATCTACTTCTTCATTGGTAAACCAGCCTGCTCTTGCCACTGCGGATGGAAGTTTTGAAAGTCCAAATAATAATGACGCTGAACAGATAGTTAGCAATTCTCTGtcattaaaagatacaactggGGGAGAAAGTAAGCCTTCAAATGAAATGGACAGGGTACCTCTAAACGATGATAAAGCAATAAGTGAACATACTGCTATTGCAGACGTTTGTGAAATTCCAAGAGAGCTTTATGATGTTGCAGACTTCCATAATACAGTAAGCTTGGATACTAAGACGCAGCAAGAACGACAGGTTGGAAGAGGTGGTGAAAAGGAAATAATTCAGTCCGCTCATATTTCAGCAAAACAATTGTGTGAATCTACAAGTGGGGAATATGCCAAGGAGTTGCATGATGAAGTGATTTTAGAGTCTGCAAAGCAGAGTCAGATCCAAAATGAGAATAGAACTGATGAGGAACCTGTTTCTAGTTATGTTGCAAAAGGTGACAATAAAAGTGTAACAATGTCAGAAATAGGATGTTCTGAAGTTTTGGCAGAAACCTGTCCTAAAGAAGACTCCTGTATTCAGTTTATTTCGAATACAGAAAAGGAAATGGAAATCCACCCAATTAATAGAAACGACGGGGAACTTTCTGTATCAATTCAGGAATGTTCAAAAACCGAGAAAAAGACATGTGgtagagaaaacaaaaatggaagCGAAGTTGATCTGTCACAAGATAATGGAGAGCAAGAAAGCTATGACTTGACTACTACAGTTCCCAGATCAAAtgctgaaaagaaaaaaaagaggaaagCGGAACACACAGCAATGAACCAATTTGATTGCAATGACTTTATAAGAAGTCCATGTGAGAGACTGAGGCCAAGAACTGGGAAGATTGCCACCACAGGCAAAACCGGAGGGGACATCAGCCAAAATAATGAGGCAAATCCAGTAGCTAAAAGGACACGGAGGCCTCCTGAAGCTTCAGTTCCTCACAAGgataaaaaagtttcaattcCTCACAAGGATAAAAAAGCTTCAGTTCCTCACAAGGATAAAAAAATCGATGTCAAAAAGCCGCACAAGTGTGACATTGATAATTGCCATATGAGTTTCACGACTAAGGCTGACTTACAGTTGCACAAACGTAACCTTTGCCCAGAAAAAGGTTGTGGTAAGAGGAAGTTCCGTTCCCACAAATACACGCTGATTCACCAGCGCGTTCATGAGGATGATAGGCCCTTTGAATGTCCATGGAAAGGCTGTTCCAAGTGTTTCAAGTGGGCATGGGCAATGACAGAGCATATAAGGGTGCATACCGGGGAAAAGCCTTATCAGTGCAAGGTGGAGGGATGCGGCCTTTCTTTCAGATTTATATCAGATTTTAGCAGACACAGGCGGAAAACAGGACACTATGTGTAA 4503 0.4006 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGLDNSSLGNGNSWKMGSDGSNGGVSRAVFTTRQQEVGQNVKKTKGGVQKPLSCVHKQVWQSGEVYTLEQFESKSKSFARSILGTSKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYHSHRRQRKRTYYKSRVDSVVCKETEMGGVKDTQNDESNGVAAPSNADSCLEMSKSAMTMPTSTPVEVLQSSKEKGSDADNDMQGTAGWKFSNSPWNLQVIARAPGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQLAALKILGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANLATPRWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLLENKLLSILLGKEATKQVVLWNADLLPDSGKYRRLPDLASTSGTYKADMSNDNISSADKSSHSLLDEMSLCMENLSDLYVGCDDLPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSILELLPDNHHLVKDSSLISVASLHSAVSSDLSVSDLVPAKDSQNQSLNKCNKYWNTSSKFLKPRIFCLEHAVQIVEMLQSKGGANVLIICHSDYPKIKAHAGAVAEEIQSAFDHNEVPMDIASPENLALIDLAIDGEEELNEFEDWTSKLGLNLRFCVNNINKSPCKQVPLTLALGMQFFNKHPGLSLNWHSRKTRSKRSNRLAQAKPDSTQRKTDDPLHARIDGSTAKKKLIQYSRRKFKSKQSCFSVASTVRESHEKLKNVSAVLSGDHDIRVSKDELDTDNFRSGCALSRGSASAAMSPTHPEIQNAEAPICPSLNTSVSEICGKESQDCQDKGYSGSLTDGIDENVDVFGTNQIAEAIVIDSKCNSLDLDGERYQEHQSACKSNINGEAVLSTSSLVNQPALATADGSFESPNNNDAEQIVSNSLSLKDTTGGESKPSNEMDRVPLNDDKAISEHTAIADVCEIPRELYDVADFHNTVSLDTKTQQERQVGRGGEKEIIQSAHISAKQLCESTSGEYAKELHDEVILESAKQSQIQNENRTDEEPVSSYVAKGDNKSVTMSEIGCSEVLAETCPKEDSCIQFISNTEKEMEIHPINRNDGELSVSIQECSKTEKKTCGRENKNGSEVDLSQDNGEQESYDLTTTVPRSNAEKKKKRKAEHTAMNQFDCNDFIRSPCERLRPRTGKIATTGKTGGDISQNNEANPVAKRTRRPPEASVPHKDKKVSIPHKDKKASVPHKDKKIDVKKPHKCDIDNCHMSFTTKADLQLHKRNLCPEKGCGKRKFRSHKYTLIHQRVHEDDRPFECPWKGCSKCFKWAWAMTEHIRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYV 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04121 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 1444 1466 IPR013087 -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 1267 1286 - -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 1253 1298 - -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 1330 1345 - -
Tsu01g04121 1500 Gene3D Classic Zinc Finger 1438 1469 - -
Tsu01g04121 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 1442 1471 IPR013087 -
Tsu01g04121 1500 SUPERFAMILY Clavaminate synthase-like 292 455 - -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 1326 1382 - -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 826 857 - -
Tsu01g04121 1500 SMART cupin_9 290 459 IPR003347 -
Tsu01g04121 1500 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1493 - -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 1064 1085 - -
Tsu01g04121 1500 Pfam JmjC domain, hydroxylase 324 441 IPR003347 -
Tsu01g04121 1500 Gene3D Cupin 9 463 - -
Tsu01g04121 1500 SUPERFAMILY beta-beta-alpha zinc fingers 1423 1478 IPR036236 -
Tsu01g04121 1500 ProSitePatterns Zinc finger C2H2 type domain signature. 1474 1498 IPR013087 -
Tsu01g04121 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 1472 1500 IPR013087 -
Tsu01g04121 1500 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1493 - -
Tsu01g04121 1500 Gene3D Classic Zinc Finger 1470 1498 - -
Tsu01g04121 1500 ProSiteProfiles Zinc finger C2H2 type domain profile. 1388 1417 IPR013087 -
Tsu01g04121 1500 SMART c2h2final6 1472 1498 IPR013087 -
Tsu01g04121 1500 SMART c2h2final6 1442 1466 IPR013087 -
Tsu01g04121 1500 SMART c2h2final6 1388 1410 IPR013087 -
Tsu01g04121 1500 SMART c2h2final6 1411 1436 IPR013087 -
Tsu01g04121 1500 SMART JmjN_1 15 55 IPR003349 -
Tsu01g04121 1500 MobiDBLite consensus disorder prediction 1352 1382 - -
Tsu01g04121 1500 ProSiteProfiles JmjC domain profile. 290 459 IPR003347 -
Tsu01g04121 1500 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Tsu01g04121 1500 Pfam jmjN domain 17 50 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04121 Tsu-Chr1 49115581 49124203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04121 1 875 C2H2 Transcription Factor Family AT5G04240 54.606 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04121 JmjC 1.1e-34 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04121 - - gmx:100819845 1987.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04121 01 49115581 49124203 Tsu01g04121 01 49115581 49124203 ECH