Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04116 ATGTGTAGTTGGAGGTTGTTTCTATGGTTGCTTTTCACATTGAGCTTCTTCTTTGGGAAGAAGATGCATTGTCAAGATATGAATGATTATGACCAAATTGGTAACCCTGCTGTTCTTCCTCTTATTACTCAGCTTGTTTATAGCAAAATTTCCAATTTGACTTCAATTCTCAGTCACCAAATTAGTACTGACTCCAATTTCTGTGTCAAAGATCAgGATTCTGATTGGAATCAAGCCTTTAATTTTTCATCTGATTTGGGCTTCTTGGAATCTTGCATTAAAAAGACAAAAGGAGATATTACAAACCGCTTGTGTACAGCTGCAGAAGTGAAGTTTTACTTAAATAGTTTAATGGAGAAATCTACAAGTGCCAATTATTTAAAGCCTAACCAGAACTGCAATTTAACCTCATGGGTTTCTGGTTGTGAGCCCGGATGGGCATGTAGTGTTCCTCCCTCAAGCCAGAAGATTAACCTTAGAGATTCAAAGGACATGCCTTCTAGAACTTCAAACTGTCAAGCATGTTGTGAAGGCTTCTTCTGTCCTCACGGTATCACGTGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACGCTCAATAAAACAACTGGTGTATGTGAACCATATCTTTATCAGCTACCTCCAATGAAGCCAAACCATAGCTGCGGAGGAGCAAATACTTGGGCTGATTTCAGTAGCAGTAGCGAAACATTTTGCTCAGCAGGATCCTACTGTCCAACAACCACCCAAAAATTTCCTTGCAGTAGTGGGCATTACTGTAGGACGGGTTCCACATCTGAGAAAAGATGTTTCAAACTGAGTTCATGTAATTCAAACACAGCAACCCAAAACATGCATGCATATGGAATTATGCTCATCGCAGCTTTGAGTACTTTGCTACTCATTATTTACAACTGCTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTGGCAAAATCAAGAGAAGCAGCGGCTAGAAGTGCAAGGAAAACTGCAAATGCACACCAAAGATGGAAATCTGCAAAAGATGCTGCTAAGAAGGGTGCAACTGGACTGCAAGCTCAGTTATCACGCAAATTCTCTCGTAAAAAGGATGAAGAAAATCttgaaaaagttaaaattttgaatCAAGAGGCTTCTGAAACAGATGTTGAATTGTTGCCGCATTCACAACCGTCAAGCATGGTTGCAAGTTCATCTGCTGCGCCAACTGAAAAGGGGAAAAATCCAAGTGGACTAATGCATATAAtacatgaaattgaaaatgatcCGCATGTTAACGACAATCCGAATACAGAAAGAGAAACTAGACATAAAAGTGCTACAAAGGAAAAACAGCCGCATACTAATACACAAATTTTTAAGTATGCGTATGCTCAACTTGAAAAAGAGAAGGCGCAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTATTAAAAATGGCTACAAATACTGAGAAATTGAAAAGGCCTTTTATCGAGATTTCTTTCAAAGATCTGACTCTCACACTTAAATCTCGAAACAAACATATATTGAGAAATGTTACGGGGAAAATCAAACCTGGCCGTATCACTGCTGTCATGGGTCCGTCAGGGGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGTCTGGTTAATGGTTCAATTCTTATAAATGGAAGGCATGAATCAATTCATTCCTTTAAGAGAATTATCGGATTTGTGCCACAAGATGATGTAGTTCATGGAAACTTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGTTATCAGCCGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCGGTAGTTGGAACAGTGGAAAAGCGAGGTATCTCTGGAGGCCAAAGGAAGCGAGTAAATGTTGGATTAGAAATGGTTATGGAGCCTTCACTTTTGATGCTAGATGAACCAACGTCTGGCTTGGACAGTGCATCGTCTCAGCTCCTTGTAAGAGCATTAAGACGCGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCAACATGTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTCATGGTCTATCACGGATCTTCGAAGAAAGTTGAAGAATACTTTTCAGGTTTGGGGATCAATGTTCCGGAGCGGATCAACCCTCCAGATTACTATATTGACATTTTGGAGGGCATAGTAGCACCTGATGGAAACTCGGGACTCCGTTATGAAGATTTGCCAGTTAAATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCAGCACAGTTTGATATGACGCCGAGTGTAAATCCAGCTAATGAATCGGGTGAAGTGGGAAAGACGTTTGCTGGAGAGTTATGGAATGACGTGAGAAACAACGTTGAACTGCGAGGGGAAAAgataaaagtcaattttttaaaatccaaGGATTTATCCGGCCGAAAAACTCCCGGTGTATTTAAGCAATATAAGTACTTTCTTATACGTGTTGGGAAGCAAAGATTACGAGAAGCTAGAATCCAGGCTGTAGATTATCTTATTTTGTTACTTGCTGGAGCTTGTTTAGGATCAATTACCAAATCGAGTGATCAAACGTTTGGCGCATCTGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGTAAAATAGCGGCGTTGAGATCATTTTCTCTAGATAAATTGCACTACTGGAGGGAGAGTGATTCCGGCATGAGCAGCTTAGCTTATTTTCTCTCCAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTATCTATGTTCTATTTCTTAACCAATCCAAGGTCTACTTTTGCAGATAATTATATTGTGTTGCTTTGTCTTGTATACTGTGTGACCGGCATAGCATACGCATTGTCCATAGTTTTTGAACCTGGCGCGGCTCAGCTGTGGTCCGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAATTTTAAAGGCTATAGCTAATTTTTGCTACTCTAAATGGGCTTTAGAAGCATTGGTCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGCTGCGGTTCACTTTTAAAAAGTGGCTATAATCTTCATGATTGGAGTCTCTGCATATCCATTCTCATTCTTATGGGTGTAATTGGTCGCGCAATAGCGTTTTTTTGTATGGTCACCTTTAAAAAGAAGTAA 3309 0.3998 MCSWRLFLWLLFTLSFFFGKKMHCQDMNDYDQIGNPAVLPLITQLVYSKISNLTSILSHQISTDSNFCVKDQDSDWNQAFNFSSDLGFLESCIKKTKGDITNRLCTAAEVKFYLNSLMEKSTSANYLKPNQNCNLTSWVSGCEPGWACSVPPSSQKINLRDSKDMPSRTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMKPNHSCGGANTWADFSSSSETFCSAGSYCPTTTQKFPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANAHQRWKSAKDAAKKGATGLQAQLSRKFSRKKDEENLEKVKILNQEASETDVELLPHSQPSSMVASSSAAPTEKGKNPSGLMHIIHEIENDPHVNDNPNTERETRHKSATKEKQPHTNTQIFKYAYAQLEKEKAQQQENKNLTFSGVLKMATNTEKLKRPFIEISFKDLTLTLKSRNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVNGSILINGRHESIHSFKRIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLVRALRREALEGVNICMVVHQPSYALFNMFDDLILLGKGGLMVYHGSSKKVEEYFSGLGINVPERINPPDYYIDILEGIVAPDGNSGLRYEDLPVKWMLHNGYPIPLDMRQHAAQFDMTPSVNPANESGEVGKTFAGELWNDVRNNVELRGEKIKVNFLKSKDLSGRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFADNYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANFCYSKWALEALVIANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTFKKK 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04116 1102 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 500 741 IPR003439 GO:0005524
Tsu01g04116 1102 SMART AAA_5 526 718 IPR003593 -
Tsu01g04116 1102 Pfam ABC transporter 517 669 IPR003439 GO:0005524
Tsu01g04116 1102 Gene3D - 498 735 IPR027417 -
Tsu01g04116 1102 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 1099 - -
Tsu01g04116 1102 Coils Coil 366 386 - -
Tsu01g04116 1102 MobiDBLite consensus disorder prediction 387 410 - -
Tsu01g04116 1102 ProSitePatterns ABC transporters family signature. 641 655 IPR017871 GO:0005524
Tsu01g04116 1102 MobiDBLite consensus disorder prediction 422 449 - -
Tsu01g04116 1102 Pfam ABC-2 type transporter 698 1102 IPR043926 GO:0140359
Tsu01g04116 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 722 IPR027417 -
Tsu01g04116 1102 MobiDBLite consensus disorder prediction 384 455 - -
Tsu01g04116 1102 MobiDBLite consensus disorder prediction 325 371 - -
Tsu01g04116 1102 CDD ABCG_EPDR 498 724 - -
Tsu01g04116 1102 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 32 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04116 Tsu-Chr1 49084125 49090826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04116 500 719 Calmodulin-binding Proteins AT2G36910 26.556 3.34e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04116 - - lang:109341040 1855.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04116 01 49084125 49090826 Tsu01g02400 01 25885984 25902483 ECH
Tsu07g03885 07 45005568 45011704 Tsu01g04116 01 49084125 49090826 ECH
Tsu01g02400 01 25885984 25902483 Tsu01g04116 01 49084125 49090826 ECH
Tsu01g04116 01 49084125 49090826 Tsu01g04116 01 49084125 49090826 ECH