Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04108 ATGGCTTTGATTGTTGGTAATCCTAAtattttctcaaacattgaAGAAATTAATTCTGACAAGGCTAATTGGAATTTTAAGGCGAAAATCATAAGACTATGGCATGTTTCTGATTTCAATCGTAGTAACAATCCTTTTTCAGTCGAAATGGTTTTGATGGACGATAAGGGTGGTAGGATACATGCAACTATTAAGAAAACtttgatttataaatttaaagatGAATTAATTCAAGGAATGGTTTACAGTTTTGAAAATTTGGGGGTTTCAACTAATGGTGGGGCTTATCGAACAACTCATCACCGATATAAGTTGAATTTCCAGTTTTCTTCTTTGATTCAAAGACTTTCTAATGTTGCTGTTGGAGGAACTCCATTTAACTTTGTTCCTATTGCTGATGTTGTGAGTGGGTCCTATGATACTGATTACTTAGTGGATGTTATTGGCGTATTGACCGGTGTAGGTGCTGAAAGGGAGATAACAAACCAAAATGGAACCACAACTAAGCTTAATGTCATTGCCTTAGAGGCAGAAGGGTATGAATATCTTCAGTGTACATTATTTGGACCCTATGTTGATGAGCTCAATGCTTTTATTGCTTCCGGTGACAAGGACAATGCTATAGTTATTGTCCAACTTGCAAAGGCAAAGACTTTCCAAGACAAGATTCATATTCAGAATTGTATGAATTGTACCCGGTTGTTCTTTAACCCAAACTGTCAAGAAAGTGTTGTCTTGAGGGAAAGCCTGCCTGAAAGTCTTGAGAGTCCTTCTCCAATGACTCTTACTCAAATCTCTGTTGAACCTGCTGTTAGCCCAGTTGACGAGTTTCTATTCAATACCCCAAGAATGACTTTGCAAGGAATCAAAGACGCAACTACtGAATCACTTAATGTTGTATGTGCAACTGTCAAGAGAATTTTGAACCCAGATTGTTTTTGGTATACGGCTTGTGTTTGTAACAAATCTGTGATCCCTGACTCTAACATGTTTTATTGCGAAAAATGCAATAAGCATGTTATGAAGGTTTTCCCAAGGTATTGTTTGAAGGTTAGGGTTATGGATCACACCGATCATGCTTCCTTTGTGATATTTGACAAAGATGCAAGCTCTTTGTTCAACATGAGCTGTGCTGATATGTTGGAGCATACTCAAACGATTGGTGGTGTTGGATCAGTTCCACCTCAAATTGCTAGGTTGGTTGATAACACCTGGTTGTTTAAGGTTGAGACTAAACCTTCAACCAATCCTAGATTTGAGCAAACATTTAGGATACGTAAAATCTGCACTGATCATGCCATAATCAAGCAATTCAAAGATAAGTGGGATAGGGAGGAAGCTGCCTTTAGCAAAATTAACAATGAGGTTGGTTCTTTAAGTACTTTGTTGGAGAAAGGAAAAGATATTTTAGTTTGTAGTTCTGCCAATATTTTGTCTGAGGATTTACAGTCATTGACCGGAAGTAGTAGCAAGGAAAAAGGGAAAGAGATTGTTTGTGAGGGTACTCCTGTTGCATTGAAACAAGATCTGATGAACAAATTTTCCTCCACTATTGTGAACCTTGATGATGATTCTCTTGATACTTTTCATTGTACCAAAAGCCCAAGTACACAAAACACTCTTATATCATCCAAGGATTTGCATGATTTGACTGCAAGTAGTGTGAAAGGAAAGGCAAAAGAAATAGTTGTTGAGGATACTCCTGCTGATGAAACTTATGAAGTAATGGTAAAAGGAAAAACTTTTGTTGGAAACATCGGTGGCGTTTGTGTTCATTCTGATAGATCTGTCATATCTCTAAATCAAATTTCAGCAAGTGAGGAAAATGGATCTAAGGACAACAAGGATTTGAATGCATTGGCTGGAATTACTATTAAAGGTAAAACCAAAGACATTGTCCTTGAAGGTACTCCTGTTGGACATATCCTTGAAGGTGCTCAGTCTGCCTCTAAGGTGGTTAAGGCTCCCAAACTAATTGCATCAGATGACATTAAGGAAGCTAAGAGCAAGAAACCTGCTAAGAGAGTTTCTCCTCAAAAGGATGATGAAGATGACAACACACCAATTAAGCTCTTGAAAAGGGCTGTCAAGATTGAGAAGATTGCTTAG 2109 0.3727 MALIVGNPNIFSNIEEINSDKANWNFKAKIIRLWHVSDFNRSNNPFSVEMVLMDDKGGRIHATIKKTLIYKFKDELIQGMVYSFENLGVSTNGGAYRTTHHRYKLNFQFSSLIQRLSNVAVGGTPFNFVPIADVVSGSYDTDYLVDVIGVLTGVGAEREITNQNGTTTKLNVIALEAEGYEYLQCTLFGPYVDELNAFIASGDKDNAIVIVQLAKAKTFQDKIHIQNCMNCTRLFFNPNCQESVVLRESLPESLESPSPMTLTQISVEPAVSPVDEFLFNTPRMTLQGIKDATTESLNVVCATVKRILNPDCFWYTACVCNKSVIPDSNMFYCEKCNKHVMKVFPRYCLKVRVMDHTDHASFVIFDKDASSLFNMSCADMLEHTQTIGGVGSVPPQIARLVDNTWLFKVETKPSTNPRFEQTFRIRKICTDHAIIKQFKDKWDREEAAFSKINNEVGSLSTLLEKGKDILVCSSANILSEDLQSLTGSSSKEKGKEIVCEGTPVALKQDLMNKFSSTIVNLDDDSLDTFHCTKSPSTQNTLISSKDLHDLTASSVKGKAKEIVVEDTPADETYEVMVKGKTFVGNIGGVCVHSDRSVISLNQISASEENGSKDNKDLNALAGITIKGKTKDIVLEGTPVGHILEGAQSASKVVKAPKLIASDDIKEAKSKKPAKRVSPQKDDEDDNTPIKLLKRAVKIEKIA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04108 702 CDD RPA1_DBD_A_like 27 113 - -
Tsu01g04108 702 CDD RPA1_DBD_B_like 146 251 - -
Tsu01g04108 702 SUPERFAMILY Nucleic acid-binding proteins 126 253 IPR012340 -
Tsu01g04108 702 SUPERFAMILY Nucleic acid-binding proteins 281 425 IPR012340 -
Tsu01g04108 702 Gene3D - 123 256 IPR012340 -
Tsu01g04108 702 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tsu01g04108 702 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Tsu01g04108 702 CDD RPA1_DBD_C 289 412 IPR013955 -
Tsu01g04108 702 MobiDBLite consensus disorder prediction 664 689 - -
Tsu01g04108 702 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 381 - -
Tsu01g04108 702 Pfam Replication factor-A C terminal domain 302 413 IPR013955 -
Tsu01g04108 702 Gene3D - 278 437 IPR012340 -
Tsu01g04108 702 PANTHER REPLICATION FACTOR A 1, RFA1 28 381 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g04108 702 Gene3D - 11 118 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04108 Tsu-Chr1 48985098 48988272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04108 14 377 Core DNA Replication Machinery Family AT2G06510 23.684 3.49e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04108 - - mtr:MTR_4g036240 611.298