Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04098 ATGGCTGGGAAGGTGGCAAAAGCAGCTTACGATGCAAAGATGGGGAAGCTTCTTCGAGAGTACACACAAGTGTTGGTGGTTTCATCGGACAATGTTGGATCGAACCAGCTTCAGGGTATAAGAAGGGCACTGCATGAAGATTCATTGGTAGTGATGGGGAAGAACTCATTGATGAAACGCTCTATCATTCAAGAAGCGGAGAAAACCGGAAACAACAACGCTTTCCTTAATCTTGTTCCACTTCTTGTGGGTAACGTTGCATTGATTTTTACCAAAGGTGACTTGAGGGATGTTAGTGAACGGATTGCCAAGCTCAAGGTTGTTAATCCAATTCTCATGTGCCCTAAGTACAGATCATACGACTCATACAAAACTTGTTCCTATATGCAATCTGGACAGTTGCCATTGGGTCTCGCATGTTGTAACCAACAATCTTCAGAAGCTTGTGAGCCTTTTCTTGTAAGCTCAAAATTCTCGCCGCCCCAACACTGTTACTTGATGCGATCGAGACAGTTCTTGATGACAAGTATATGGTCTCCTTTTCTCCTTTTAGCCGGTAACTTGTGA 567 0.4374 MAGKVAKAAYDAKMGKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSLVVMGKNSLMKRSIIQEAEKTGNNNAFLNLVPLLVGNVALIFTKGDLRDVSERIAKLKVVNPILMCPKYRSYDSYKTCSYMQSGQLPLGLACCNQQSSEACEPFLVSSKFSPPQHCYLMRSRQFLMTSIWSPFLLLAGNL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04098 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 187 - -
Tsu01g04098 188 SUPERFAMILY Ribosomal protein L10-like 7 107 IPR043141 -
Tsu01g04098 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Tsu01g04098 188 PANTHER RIBOSOMAL PROTEIN L10P-RELATED 1 187 - -
Tsu01g04098 188 Gene3D - 3 122 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04098 Tsu-Chr1 48898390 48898956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04098 1 110 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 60.526 5.30e-38 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04098 K02941 - jre:108980032 142.124