Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04080 ATGGAGGCTGCTTCATCATTCTTTGGAATTAGAGAAGAAAATCAAAGTCAAATaacacatcatcatcaatctACAACTACTTCTACTACTTCTTCAGCTCCTTCAACCACAATTCCtccaaagaaaagaagaaatcaaccaGGAACACCAAAGCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAATAGATTTATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAACAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAGCAAAAGTCTAACAAAGATCCAAAGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCTTTAGGAGACCTAACTGGGATTAAGAAGCACTTTTCTCGTAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATTACTCATAGAGCATTTTGTGATGCACTAGCACAAGAGAGTGCATTAAGACACCCTAACCCTTTTGGTACTCATTTGTATTCCACAGCAAACACTGGCCATCACATGAGTTTAGGCCAAATTTCTCATCAAttacaaaatcatcaaaaccaaACTAACAACAATATTTTGCGCCTCGGATCATCGTCATCAGCACCAAAATTTGATCAACAATTAATCTCATCACAACACTCTTCATTTGGTCCATCTTCAGCTTCATTCTTCATGAGTGATATTCCAAATCAATCATCACCATCATTTGAAGAACATCAATTCACAAACAAACAACTTCATGGTCTAATGCAACTTCCTAATCTACAAGGAAACAACACAAATAATAATGTTTTCAACCTCATGAATAATATTCATGATCATCATCAATTCAACAATGTCAACAATCCTCTAATTagtgatcatcatcatcaatcaatctTTGATCAAAACATGTCTAATGATCCTCACATGTCGGCCACCGCATTGCTTCAAaaagcttctcaaattggttcaacaaattcaaccaacaacaacaaaggtAACACTAATACCTCTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATCATGATGACAACAATGATGAACTTCATGGATTGATAAATTCTATTGCAAATGGAAACACATCATCATCCATATTTGGCAATGATGAAAACAACCTTAATATGAGGTTTGGTGGATCAGATAAGTTAACTTTAGATTTTCTTGGTGTTGGTGGAATGGTTAGAAACATGAATAGTGGTGCTGGATTTTCACAACATGCTATGGCTTCTTTGAATCATGACCTAAAATCAGTTCAGTCAAGTCAAAGTCAACATTTTGGAAGCTCAAATTTCATGCAATGA 1461 0.3333 MEAASSFFGIREENQSQITHHHQSTTTSTTSSAPSTTIPPKKRRNQPGTPKPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKDPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESALRHPNPFGTHLYSTANTGHHMSLGQISHQLQNHQNQTNNNILRLGSSSSAPKFDQQLISSQHSSFGPSSASFFMSDIPNQSSPSFEEHQFTNKQLHGLMQLPNLQGNNTNNNVFNLMNNIHDHHQFNNVNNPLISDHHHQSIFDQNMSNDPHMSATALLQKASQIGSTNSTNNNKGNTNTSFGNRSSSMENDHDDNNDELHGLINSIANGNTSSSIFGNDENNLNMRFGGSDKLTLDFLGVGGMVRNMNSGAGFSQHAMASLNHDLKSVQSSQSQHFGSSNFMQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04080 486 MobiDBLite consensus disorder prediction 9 43 - -
Tsu01g04080 486 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Tsu01g04080 486 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Tsu01g04080 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Tsu01g04080 486 MobiDBLite consensus disorder prediction 368 389 - -
Tsu01g04080 486 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Tsu01g04080 486 SMART c2h2final6 146 166 IPR013087 -
Tsu01g04080 486 SMART c2h2final6 70 92 IPR013087 -
Tsu01g04080 486 SMART c2h2final6 111 141 IPR013087 -
Tsu01g04080 486 MobiDBLite consensus disorder prediction 1 53 - -
Tsu01g04080 486 MobiDBLite consensus disorder prediction 368 396 - -
Tsu01g04080 486 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 458 - -
Tsu01g04080 486 Gene3D Classic Zinc Finger 124 202 - -
Tsu01g04080 486 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 3 458 - -
Tsu01g04080 486 Gene3D Classic Zinc Finger 50 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04080 Tsu-Chr1 48694878 48699324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04080 65 451 C2H2 Transcription Factor Family AT2G02080 50.118 9.74e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g04080 zf-C2H2_jaz 2.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04080 K25870 - gmx:102663407 500.36