Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04078 ATGGCTAGGATTAAACCTCAGGCTCTGTTACAGCAAAGCAAAAGGAAGAAAGGACCTTCACGCCTAAGTGCAGCGACTATTATATTTTACTCCTTGATTCTTCTCTTGGTTGGTTTTTTCCTATTGGCTACATACAGACATTGGTCCAACAGGTCAAGATTGTTGCAATCAGAAAGTCACATGACAGTATCTGATGAGGGTGAAAATAGTTTTGTGGACTCGAAGAAATCTGAGCTACCTGGATATGCTGTTTTAAATACCTCTAAAGGGTCTATAATAGTAGAACTGTACAAGGAAAGTGCTCCTGAAGCTGTTGATGAATTTATTGACTTATGTCAAAAAGGGCATTTCAAAGGGATGCTTTTTAAACGTGTAATTAAGCATTACGTGATTCAGGCAGGGGATGGCCAAGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTGCAAGTATGAAACACGAAGCATTCATGCTCGGAACATCCAAGGGCAAACACACCAACAAAGGATTTGATCTTTTCATTACAACTGCACCGATACCGGATCTTAATGAGAAACTTATTGTGTTTGGGCAAGTCGTCAAGGGAGAGGATGTTGTTCAGGAAATCGAAGAAGTGGATACTGATGAACATTACACACCTAAAATATCTATTGGTATACTTGATGTGACTCTCAAACAGAAGATCTGA 696 0.4009 MARIKPQALLQQSKRKKGPSRLSAATIIFYSLILLLVGFFLLATYRHWSNRSRLLQSESHMTVSDEGENSFVDSKKSELPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFKRVIKHYVIQAGDGQGTGAADWNLRGKQPASMKHEAFMLGTSKGKHTNKGFDLFITTAPIPDLNEKLIVFGQVVKGEDVVQEIEEVDTDEHYTPKISIGILDVTLKQKI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04078 231 SUPERFAMILY Cyclophilin-like 80 227 IPR029000 -
Tsu01g04078 231 Gene3D - 68 231 IPR029000 -
Tsu01g04078 231 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 231 - -
Tsu01g04078 231 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 79 227 IPR002130 GO:0000413|GO:0003755
Tsu01g04078 231 CDD cyclophilin 84 224 - -
Tsu01g04078 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 96 111 IPR002130 GO:0000413|GO:0003755
Tsu01g04078 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 202 IPR002130 GO:0000413|GO:0003755
Tsu01g04078 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 186 IPR002130 GO:0000413|GO:0003755
Tsu01g04078 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Tsu01g04078 231 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 84 225 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04078 Tsu-Chr1 48650696 48655126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04078 81 227 U-box Gene Family AT5G67530 33.766 4.67e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04078 - - gmx:100781538 385.571