Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04056 ATGCTGGTTCGAAGAAGAGTGATGAGTTGGAGAAGGGTAGCTAAATCCCTTCAAGCTATGTTAGCTCATGCCTTTCTTTTCTCCTTCactcttcttcttgttctcaaccTTGATCGTTTCTTCCTTCTCTCATGGTGGACCGTATTTTTGCCTCTTTGGCTGTTTCATGTGGTTGTAGCACGAGGCAGGTTTTCCATGCCTGCTCCTTCAATGCCTCATGGTCGCCAATGGGCGCCTTGTCATTCAGTTATAGCAACACCATTACTTGTGGCATTTGAGCTTCTTCTGTGTATACATCTTGGTAGCAGTTATGTGGTGAATTTGAAGATTGTATTCATACCCCTTATAGCTTTTGAATTGGTGATTTTGATCGATAACATCAGGATGTGTAGGGCTTTGATGCCTGGAGATGAGGAAAATATGACGGATGAAGCAGTATGGGAAACTCTTCCTCATTTCTGGATTTCGATATCCATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTTGGCTGGTGGGACTTGTTTATAAATTATGGTATTGCACAGTGCTTTGCGTTTCTCGTATGTACAAAGTGGCACAATCCTACGATTCATGGAAACGGTCACATTACAGAACCATGTTCGTCCTCAAATACCATAAGATATTTGGAATGGAGTAGAGAAGGTATAGTTATTTCTACCGATGAAGATGGGGAGCAAAATGCGTTTTGCAGTCTGCAGGATATAGGCGGACATATAATGAAAATTCCATTCATTGCTTTCCAAATACTACTTTTTATGCATTTAGAGGGAACACCAACGGGTGCAAAAGATATACCAATTTGGGTAATTTTTTCTCCGCTTCTACTGTTGCAAGGAGCTGGAGTATTATTTGCAGCATATAGATTAATAGAGAAGATTGTTCTTTTACTCCATCACGGGGATCGTCCTAGGAGCTACTCATCTATAGCATCAAAATCCCGTGACTGCTTTGGATTTTTTCATCATGGATCAAGGTTGTTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTCTGTGCCGGGAGTTCTGGGTATAATACTTTCTCCCCCGATACAGTGAAGAAAATGCCTAGAGGGGAACTTGTTGAGGAGATTTGGAGACTTCAAGCTGCACTTGGTGAGCAGACAGAAGTTACAAAATATAGCCAGGAGGAATATGAAAAACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTCCTCCTTCCCTGCAAGCATCACATTCTTTGCAGCACCTGCTGCGAAAAATGCAAGAAGTGCCCTATCTGCCGTGGAACCATTGAAGAACGGATGCCTGTATATGATGTGTAG 1404 0.4124 MLVRRRVMSWRRVAKSLQAMLAHAFLFSFTLLLVLNLDRFFLLSWWTVFLPLWLFHVVVARGRFSMPAPSMPHGRQWAPCHSVIATPLLVAFELLLCIHLGSSYVVNLKIVFIPLIAFELVILIDNIRMCRALMPGDEENMTDEAVWETLPHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGNGHITEPCSSSNTIRYLEWSREGIVISTDEDGEQNAFCSLQDIGGHIMKIPFIAFQILLFMHLEGTPTGAKDIPIWVIFSPLLLLQGAGVLFAAYRLIEKIVLLLHHGDRPRSYSSIASKSRDCFGFFHHGSRLLGWWSIDEGSREEEARLFCAGSSGYNTFSPDTVKKMPRGELVEEIWRLQAALGEQTEVTKYSQEEYEKLQNEKILCRVCFEEQINVVLLPCKHHILCSTCCEKCKKCPICRGTIEERMPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04056 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Tsu01g04056 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 467 - -
Tsu01g04056 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Tsu01g04056 467 Pfam Transmembrane Fragile-X-F protein 35 295 IPR019396 -
Tsu01g04056 467 SUPERFAMILY RING/U-box 410 462 - -
Tsu01g04056 467 Pfam Zinc finger, C3HC4 type (RING finger) 418 460 - -
Tsu01g04056 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 466 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04056 Tsu-Chr1 48429219 48434757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04056 8 467 C3H Transcription Factor Family AT1G73950 64.103 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04056 - - gmx:113000756 816.609